Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00957 ATGGCTCTGGTTCTGTACTCCTGGAACACTAACAAAAATGCTTACAAAGCTCTTATAGTTGCAGAATACAATGGTGTCAAGGTTGACCTTGCCCCAGGTTTTACCATGGGCGTAACCAATAAGTCTCCTGAGTTTCTCAAAATGAATCCTATTGGGAAGGTTCCTGTGCTTGAAACACCCGAAGGTGGTATCTTTGAGAGCAATGCCATAGCTCGCTATGTTGCTCGCTTGAAGGACTGTGGTTTATTTGGTTCTTCTCCAATTGAATATGGACACGTTGAACAATGGATTGACTTTGCCACACTTGAAATTGATGTTCATATTGGTGCTTTAGCAGGGCCTAGATATGGATATCGCGCTTACCATGCTGCTGTTGAAGAAGCTGCAAACGCTGCCCTAAAACGCTCTTTTGCTGCTCTGAACTCTTACCTTGCTTCAAACACATACCTTGTTGGACATTCTGTGACACTGGCTGATATCATTGTAACATGCAATTTGTATTGGGGAATCTCTTTTCTGTTGACTAAAAGCTTTACTTCTGAGTTCCCTCACGTCGAGAGGTACTTCTGGACAATGGTCAATCAACCAAATTTCAAGAAGATTATTGGTGAGTTTAAGCAGACAGAAACTGTTCCACCAGTGAAGACACCGGGAGAGGCTGCAGCAGCTGCCAAGCCAAAGGCTGAGCCTAAGAAGGAAGAGAAGCCCAAAGCAGCAGCACCTGCAGAGGAAGAGGATGCACCAAAGCCCAAGGCCAAAAATCCTCTTGACCTCCTTCCTCCCAGTAAGATGATTTTGGATGAGTGGAAACGTCTCTACTCTAACACAAAAACTAACTTCCGTGAGGTTGCAATCAAAGGATTCTGGGACATGTACGATCCTGAAGGGTACTCCCTTTGGTTCTGTGATTACAAGTACAATGACGAGAACACAGTTTCCTTTGTGACTTTGAACAAAGTCAGCGGATTTCTCCAGAGAATGGATCTTGCTCGTAAATATGCCTTTGGAAAGATGCTTGTGATCGGATCAGAGGCACCCTTCAAGGTGAAGGGGCTATGGCTTTTCCGTGGGCAAGAAATCCCACAATTTGTTATGGACGAATGCTATGACATGGAGCTGTACGAGTGGAAGAAGGTCGATATCTCCGATGAAGCCCAGAAGGAGAGAGTGAACCAAATGATTGAAGATCAGGAACCATTTGAGGGAGAGGCTCTCTTGGATGCCAAATGCTTCAAGTGA 1239 44.87 MALVLYSWNTNKNAYKALIVAEYNGVKVDLAPGFTMGVTNKSPEFLKMNPIGKVPVLETPEGGIFESNAIARYVARLKDCGLFGSSPIEYGHVEQWIDFATLEIDVHIGALAGPRYGYRAYHAAVEEAANAALKRSFAALNSYLASNTYLVGHSVTLADIIVTCNLYWGISFLLTKSFTSEFPHVERYFWTMVNQPNFKKIIGEFKQTETVPPVKTPGEAAAAAKPKAEPKKEEKPKAAAPAEEEDAPKPKAKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLVIGSEAPFKVKGLWLFRGQEIPQFVMDECYDMELYEWKKVDISDEAQKERVNQMIEDQEPFEGEALLDAKCFK 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4875621 4879002 + CmoCh04G009570.1 Cmo04g00957 379932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00957 412 SFLD Main (cytGST) 3 192 - -
Cmo04g00957 412 SUPERFAMILY Thioredoxin-like 2 77 IPR036249 -
Cmo04g00957 412 Pfam Glutathione S-transferase, C-terminal domain 122 196 IPR004046 -
Cmo04g00957 412 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 214 IPR010987 -
Cmo04g00957 412 SUPERFAMILY GST C-terminal domain-like 73 213 IPR036282 -
Cmo04g00957 412 CDD GST_C_EF1Bgamma_like 89 211 - -
Cmo04g00957 412 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 252 412 IPR036433 GO:0003746|GO:0006414
Cmo04g00957 412 PANTHER - 1 412 - -
Cmo04g00957 412 Pfam Glutathione S-transferase, N-terminal domain 1 76 IPR004045 -
Cmo04g00957 412 Pfam Elongation factor 1 gamma, conserved domain 251 359 IPR001662 GO:0003746|GO:0006414
Cmo04g00957 412 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 412 IPR044628 GO:0004364
Cmo04g00957 412 Gene3D - 80 213 - -
Cmo04g00957 412 Gene3D Glutaredoxin 1 74 - -
Cmo04g00957 412 MobiDBLite consensus disorder prediction 225 252 - -
Cmo04g00957 412 MobiDBLite consensus disorder prediction 212 253 - -
Cmo04g00957 412 SFLD Glutathione Transferase (cytosolic) 3 192 IPR040079 -
Cmo04g00957 412 CDD GST_N_EF1Bgamma 3 77 - -
Cmo04g00957 412 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 252 412 IPR001662 GO:0003746|GO:0006414
Cmo04g00957 412 SMART EF1G_2 251 359 IPR001662 GO:0003746|GO:0006414
Cmo04g00957 412 SUPERFAMILY eEF1-gamma domain 253 412 IPR036433 GO:0003746|GO:0006414
Cmo04g00957 412 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00957 Cmo16g00830 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00957 Cmo-Chr4:4875621 Cmo04g02055 Cmo-Chr4:11482638 0 dispersed
Cmo16g00830 Cmo-Chr16:4362850 Cmo04g00957 Cmo-Chr4:4875621 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00957 K03233 - csv:101215571 675.241