Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00967 ATGTTGTTTTTCCTTGTTTTTACTTTCTTCTCTCTTCTAGGCCCCTCTTCTTCCCATAGTCTGGTCAGTGATTTCCATGTCTTGCTTGCTCTGAAACAAGGGTTTCAATTCTCGGACTCTGCTGTGCTAAGCACATGGACTGCGTCAAACTTTAGCTCCGTTTGTTCGTGGGTCGGGATTCAGTGCTCTGACAAACGAGTTGTGTCGGTTGACTTGACAGATTTGAGCCTTGGAGGCTCTGTTTCACCGTTTATTTCTAGTCTTGACCAACTTTCTCAGTTGTCTGTGGCTGGAAATAACTTCTCCGGTAGCATTGAAGTAGTGAATTTGAGTTACCTCCGATTCCTTAACATCTCAAACAACCAGTTTACTGGGACTCTGGACTGGAACTTTTCGAGTCTGCCAAACTTAGAAGTGTTCGATGCTTATAACAACAACTTCACTGCTGTGCTCCCCACTGAGATTTTGAACTTACAGAACCTCAAGTACTTGGACCTTGGAGGTAACTTTTTCCATGGAACAATCCCCGAAAGCTATGGCAATTTCGAAGGATTGCAATATCTTTCTCTTGCAGGAAATGATTTGGTCGGGAAAATCCCAGGTGAGTTGGGAAATCTTACAACTTTGAGAGAAATTTACTTGGGTCATTACAATGTTTTCGAAGGTGGGATTCCACCCGAGCTCGGGAAGTTGGAGAATTTGGTTATTATGGAGATTACAGACTGCGGTTTGGACGGTCAAATTCCTCATGAACTCGGAAATTTGAAGGCCTTGAACACTCTATATTTGCATACGAATCTACTCTCAGGTTCAGTCCCGAAGCAGTTAGGCAACTTGACAAACTTGGTCTTTCTCGATCTATCCAACAATGCACTCACAGGAGAAATCCCATCTGAGTTTGTTGATCTCAAACAGCTCAAGCTTTTCAACCTCTTCATGAACAAACTACACGGATCTATTCCAGATTACGTAGCAGATTTGCCGAACTTGGAGAGCTTGGCGCTGTGGATGAACAACTTCACCGGCACAATCCCAAAGAATCTCGGCCAAAATGGGAGGCTTCAGCTCCTTGATTTGTCAACGAACAAGCTCACGGGCACAATCCCTCAGGATTTGTGTTCATCGAACCAGCTGAAAATATTGATTCTGATGAACAACTTCCTGTTTGGGCCAATCCCTGATGGCTTGGGGACATGTACCAGTCTAACAAAAGTGAGGTTGGGGCAGAACTATCTGAACGGAAGCATTCCTAATGGCTTCATTTACTTGCCTCAGCTAAATCTAGCAGAGTTTCAGGACAATTACCTTTCAGGTACACTTTCAGAGAATTGGGAGAGTTCATCAAAACCCATCAAATTAGGGCAACTTAATCTCTCTAACAATCTTCTCTCTGGAACTTTACCATTCTCATTTTCTAATTTCTCTTCTCTGCAAATTCTCCTCCTTGATGGCAATCAGTTTTATGGTACAATTCCTCCTTCCATCGGGGAACTCAATGAACTTCTGAAGCTCGATCTTAGCAGAAACTCACTTTCGGGTGAAATTCCACCTGAAATTGGGAATTGTATCCATCTCACTTACCTTGATTTGAGCAAGAACAACCTCTCTGGCCCAATTCCACCTGAAATTTCCAATGCACATATTCTCAATTACCTCAACTTGTCGAGAAATCACCTAAATCAATCCCTACCGAAATCAATAGGGGCCATGAAGAGCCTCACGATTGCAGATTTTTCCTTCAATGATTTCTCCGGAAAGCTACCGGAATCAGGACAACTTGCCTTCTTCAATGCTTCGTCTTTCGCCGGAAATCCTCAACTCTGCGGATCTCTCCTCAACAATCCCTGCAACTTCGCAACAACGGCAACAAAATCGGGAAAAACTCCGGCGTATTTCAAGCTAATCTTCGCCCTTGGCCTACTGATTTGCTCCCTAGTGTTTGCCATAGCCGCAATAGTCAAAGCAAGATCGATTAAAAGAAACGGCTCAAGTTCGTGGAAAATGACCTCATTCCAAAAGCTCGATTTCACCGTCTACGACGTTTTAGAGTGCGTGAAAGATGGAAACGTGATCGGAAGAGGCGGCGCCGGCATCGTCTACCACGGAAAAATGCCGAATGGAGTTGAAATCGCAGTGAAGAAACTCCTAGGGTTCGGCCCCAACAGTCACGACCACGGATTCCGAGCCGAAATCCAAACCCTAGGCAACATTCGACACCGGAACATCGTCAGATTATTCGCTTTCTGCTCCAATAAAGAGACAAATCTCCTCGTATACGAATACATGAGGAACGGAAGCTTAGGCGAAGCACTCCACGGAAAAAAAGCCTCATTCCTCGGATGGAATTTGAGGTACAAAATCGCCATTCAAGCCGCTCAAGGTCTCTGCTATCTCCACCACGATTGTTCTCCACTAATCGTCCACCGAGACGTGAAATCGAACAACATTCTCTTGAATTCGAACTTCGAAGCTCACGTCGCCGATTTCGGACTGGCGAAGTTCATGTTCGACGGCGGTGCATCGGAATGCATGTCGGTTATCGCCGGATCTTACGGCTACATCGCTCCTGAATATGCATACACGTTAAGAGTGGATGAAAAAAGTGATGTGTACAGTTTTGGAGTAGTGCTATTAGAGCTTTTGACGGGACACCGCCCAGTTGGCGATTTTGGAGACGGAGTAGTTGACATAGTACAATGGTGCAAAAGAACTCTAGAAAACGGGGAGAGCGAAAATGACATTCTTGACGTAGTCGACAAAAGGATAGGAACAGTGCCCAAAGAGGAAGCAAAACACTTATTCTTCGTAGCAATGTTGTGCGTGCAAGAGAACAGCGTGGAGAGACCAACTATGAGAGAAGTGATTCAAATGCTGGTTGAATTTCCTCACCAATCTCCAGAATGTAACAAATCTTCGAGTTCTTCTCCTTATCAAAATTTGAAAAAAAACGAAAAGATAAAAGAAGACTCGTCAAAGTTCAAACCCGACCATTGGGTTTAA 3000 44.37 MLFFLVFTFFSLLGPSSSHSLVSDFHVLLALKQGFQFSDSAVLSTWTASNFSSVCSWVGIQCSDKRVVSVDLTDLSLGGSVSPFISSLDQLSQLSVAGNNFSGSIEVVNLSYLRFLNISNNQFTGTLDWNFSSLPNLEVFDAYNNNFTAVLPTEILNLQNLKYLDLGGNFFHGTIPESYGNFEGLQYLSLAGNDLVGKIPGELGNLTTLREIYLGHYNVFEGGIPPELGKLENLVIMEITDCGLDGQIPHELGNLKALNTLYLHTNLLSGSVPKQLGNLTNLVFLDLSNNALTGEIPSEFVDLKQLKLFNLFMNKLHGSIPDYVADLPNLESLALWMNNFTGTIPKNLGQNGRLQLLDLSTNKLTGTIPQDLCSSNQLKILILMNNFLFGPIPDGLGTCTSLTKVRLGQNYLNGSIPNGFIYLPQLNLAEFQDNYLSGTLSENWESSSKPIKLGQLNLSNNLLSGTLPFSFSNFSSLQILLLDGNQFYGTIPPSIGELNELLKLDLSRNSLSGEIPPEIGNCIHLTYLDLSKNNLSGPIPPEISNAHILNYLNLSRNHLNQSLPKSIGAMKSLTIADFSFNDFSGKLPESGQLAFFNASSFAGNPQLCGSLLNNPCNFATTATKSGKTPAYFKLIFALGLLICSLVFAIAAIVKARSIKRNGSSSWKMTSFQKLDFTVYDVLECVKDGNVIGRGGAGIVYHGKMPNGVEIAVKKLLGFGPNSHDHGFRAEIQTLGNIRHRNIVRLFAFCSNKETNLLVYEYMRNGSLGEALHGKKASFLGWNLRYKIAIQAAQGLCYLHHDCSPLIVHRDVKSNNILLNSNFEAHVADFGLAKFMFDGGASECMSVIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELLTGHRPVGDFGDGVVDIVQWCKRTLENGESENDILDVVDKRIGTVPKEEAKHLFFVAMLCVQENSVERPTMREVIQMLVEFPHQSPECNKSSSSSPYQNLKKNEKIKEDSSKFKPDHWV 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4920178 4924231 + CmoCh04G009670.1 Cmo04g00967 379942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00967 999 Gene3D Ribonuclease Inhibitor 219 323 IPR032675 -
Cmo04g00967 999 Gene3D Ribonuclease Inhibitor 23 128 IPR032675 -
Cmo04g00967 999 Gene3D Ribonuclease Inhibitor 324 619 IPR032675 -
Cmo04g00967 999 Pfam Protein tyrosine and serine/threonine kinase 688 958 IPR001245 GO:0004672|GO:0006468
Cmo04g00967 999 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 12 967 - -
Cmo04g00967 999 MobiDBLite consensus disorder prediction 981 999 - -
Cmo04g00967 999 SUPERFAMILY L domain-like 352 609 - -
Cmo04g00967 999 MobiDBLite consensus disorder prediction 965 980 - -
Cmo04g00967 999 PANTHER UNNAMED PRODUCT 12 967 - -
Cmo04g00967 999 Gene3D Ribonuclease Inhibitor 129 218 IPR032675 -
Cmo04g00967 999 Pfam Leucine rich repeat 160 216 IPR001611 GO:0005515
Cmo04g00967 999 ProSiteProfiles Protein kinase domain profile. 685 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00967 999 SUPERFAMILY RNI-like 69 412 - -
Cmo04g00967 999 SMART serkin_6 685 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00967 999 PRINTS Leucine-rich repeat signature 354 367 - -
Cmo04g00967 999 PRINTS Leucine-rich repeat signature 498 511 - -
Cmo04g00967 999 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Cmo04g00967 999 Gene3D Transferase(Phosphotransferase) domain 1 762 985 - -
Cmo04g00967 999 Gene3D Phosphorylase Kinase; domain 1 650 761 - -
Cmo04g00967 999 SMART LRR_typ_2 134 158 IPR003591 -
Cmo04g00967 999 SMART LRR_typ_2 279 303 IPR003591 -
Cmo04g00967 999 SMART LRR_typ_2 255 278 IPR003591 -
Cmo04g00967 999 SMART LRR_typ_2 327 351 IPR003591 -
Cmo04g00967 999 SMART LRR_typ_2 352 375 IPR003591 -
Cmo04g00967 999 SMART LRR_typ_2 498 522 IPR003591 -
Cmo04g00967 999 MobiDBLite consensus disorder prediction 964 999 - -
Cmo04g00967 999 SUPERFAMILY Protein kinase-like (PK-like) 669 959 IPR011009 -
Cmo04g00967 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 806 818 IPR008271 GO:0004672|GO:0006468
Cmo04g00967 999 Pfam Leucine Rich Repeat 113 134 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00368 Cmo-Chr4:1787381 Cmo04g00967 Cmo-Chr4:4920178 0 dispersed
Cmo04g00967 Cmo-Chr4:4920178 Cmo07g00616 Cmo-Chr7:2771862 0 dispersed
Cmo16g00218 Cmo-Chr16:963327 Cmo04g00967 Cmo-Chr4:4920178 0 dispersed
Cmo20g01028 Cmo-Chr20:8825713 Cmo04g00967 Cmo-Chr4:4920178 8.84E-30 dispersed
Cmo07g00002 Cmo-Chr7:12038 Cmo04g00967 Cmo-Chr4:4920178 0 transposed
Cmo16g00839 Cmo-Chr16:4422624 Cmo04g00967 Cmo-Chr4:4920178 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74258 PF00069 Pkinase 2.90E-43 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00967 - - csv:101215633 1791.93