Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00973 ATGGCTACGGTTCTCGATTCCCTCGCTCTTCCCTCTTCCTCCGTCTTGGCTTCCACCACCTTCTCCGGCCGTCGGACCTCCCTCGCGCTTCCGCGCTACAGAGCATTGAAGGTCGGACACAGCTTCACTTCCCATTCTATAAAATCTGCGAGATCGAATGCCAGATTTACTCATCGTTCTGGCAGAGTCGTCTGCGAAGTACCTTCTGCTTCAGAAGCTACTTGGCAGTCCCAGGTTATTGAATCTGGTGTACCGGTTCTAGTTGAATTCTGGGCTCCATGGTGCGGTCCTTGCCGAATGATTCATCCGGTTGTTGATGAACTATCTGATGAGTATGCAGGAAAGTTTAAATTTTACAAGGTGAATACTGATGAGGAAGCTGGGATTGCATCCCAATGTGCTATCAGAAGCATCCCCACTGTCATTATCTTCAAAAATGGTGAGAAGAAGGAGGCAATAATTGGTGCAGTTCCCAAAACAACTCTGACTGACAGCATGGACAAATTCTTGTAG 513 48.15 MATVLDSLALPSSSVLASTTFSGRRTSLALPRYRALKVGHSFTSHSIKSARSNARFTHRSGRVVCEVPSASEATWQSQVIESGVPVLVEFWAPWCGPCRMIHPVVDELSDEYAGKFKFYKVNTDEEAGIASQCAIRSIPTVIIFKNGEKKEAIIGAVPKTTLTDSMDKFL 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4945334 4947961 + CmoCh04G009730.1 Cmo04g00973 379948

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00973 170 ProSiteProfiles Thioredoxin domain profile. 45 170 IPR013766 -
Cmo04g00973 170 PANTHER THIOREDOXIN M-TYPE PROTEIN 2 170 - -
Cmo04g00973 170 TIGRFAM thioredoxin: thioredoxin 72 169 IPR005746 GO:0015035
Cmo04g00973 170 Gene3D Glutaredoxin 67 170 - -
Cmo04g00973 170 PANTHER GEO12009P1 2 170 - -
Cmo04g00973 170 Pfam Thioredoxin 69 167 IPR013766 -
Cmo04g00973 170 SUPERFAMILY Thioredoxin-like 66 170 IPR036249 -
Cmo04g00973 170 CDD TRX_family 78 167 - -
Cmo04g00973 170 PRINTS Thioredoxin family signature 94 103 - -
Cmo04g00973 170 PRINTS Thioredoxin family signature 86 94 - -
Cmo04g00973 170 PRINTS Thioredoxin family signature 134 145 - -
Cmo04g00973 170 ProSitePatterns Thioredoxin family active site. 87 105 IPR017937 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00973 K03671 trxA; thioredoxin 1 - csv:101204508 245.743
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00973 Cmo16g00845 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00973 Cmo-Chr4:4945334 Cmo04g02534 Cmo-Chr4:18609825 3.17E-42 dispersed
Cmo12g00100 Cmo-Chr12:542944 Cmo04g00973 Cmo-Chr4:4945334 1.94E-14 transposed
Cmo16g00845 Cmo-Chr16:4457627 Cmo04g00973 Cmo-Chr4:4945334 1.46E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g1097 . . . . . . . . . . . . . . Sed04g1597 Cpe01g00825 Cpe14g00681 Bhi01g01590 Tan01g0784 Cmetu04g0308 . Hepe07g0512 Mch10g0552 . Cla05g01024 Cam05g1118 Cec05g1128 Cco05g1118 Clacu05g1109 Cmu05g1058 Cre05g1133 . . . . . . . Cme06g01218 . . . . . . . . . Cmo04g00973 . . . . . . . . . . . . . . . . . . . . . Lsi05g00163 . . .
Vvi19g240 . . . . . . Bma10g00502 . Cmo16g00845 Cmo04g00973 . . . . . . . . . . . . . . Cla10g00647 Cam10g0643 Cec10g0664 Cco10g0639 Clacu10g0666 Cmu10g1493 Cre10g0874 . . Cone14ag1070 Cone15ag1059 . Csa03g00627 . . . . . Bda12g00865 . Bpe03g00834 . . . . . Cma04g00906 Cma16g00782 Car04g00849 . Cpe14g00681 . . . . . . . . . . . . . . . Lsi05g00715 . Chy06g01700 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004200 2 2 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00973 Cmo_Chr04 FPKM 75.768211 74.431953 48.485912 48.697266 70.624069 70.752197 63.931496 54.913013 62.789452 53.264206