Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00974 ATGATGGTAGCCATGATTTATGGGAATGGTGGGTTTGTTTGGGTTTTGCATGCGTTGTTTTTCATGGTGGTCGGTGGGTCCTTCGTCCATGGGGACGGTGGTGCTTGGCTTGATGCTCATGCAACTTTCTATGGAGCTGATCAAAACCCTACTAGCCTCGGAGGAGCATGTGGTTACGACAATACATTTCATGCCGGATTTGGAATAAACACGGCGGCGGTGAGCGGCGCACTTTTCAGAGGAGGAGAGGCTTGCGGCGCTTGCTTCCTAGTAATTTGCAACTACAACGTGGACCCCAAGTGGTGCCTCCGCCGCCGCGCCGTCGCAATCACCGCCACGAACTTCTGCCCCTCCAATAACAACGGGGGCTGGTGCGACCCCCCTCGCGCGCACTTCGACATGTCGTCACCTGCCTTTCTTACCATTGCTCGGCAAGGCAACGAAGGGATCGTCCCTGTCCTTTACAAGAGGGTAAGTTGTAGAAGGAAGGGAGGAGTTCGATTCACATTGAGAGGACAATCAAACTTCAATATGGTAATGATATCGAACGTCGGTGGCAGCGGCGACATAAAGGCTGCATGGGTTAAGGGGTCGAGGACGAGGACGTGGATGCTCATGCATCGTAATTGGGGCGCAAACTGGCAAGCCAACGTCGACCTTCGAAACCAAATAATGTCGTTTAAGGTTTCCGGAGCTCCGGCCTTGGCGGCGGCATTGGCAATGTTCAAAATCTTGAGGAGCTTTTCTTCAGGTTTCACGAGAACGGCAAGAACGGAGACAGATGCATTCTGTTTTGTAGCGTTGAGATTATACAGCGCGAGACGAACCTGCAACCGAAGAAACCTCTTCGCCAGGATCAGTCCTCTCGGTTCTCCTGAGCTTAGTGTAGTTCCGATTCTTGATCAGTGGATTCAGGAAGGCAGGATGATCAAGGACTTTGAGATGCGGAGAATCGTTCGCGACCTTCGTAATTGCCGGCGGTATGGCCAAGCCCTTCAGGTGTCTGAATGGATGCGTAGCAAGGGACTTTTCTCCTTTACAACTAGAGACTTCGCTGTACAGCTTGATCTGATCGGCCGAGTTCGGGGGATCGATTCTGCAGAGAAGTATTTCAGCAGTGTTTCTAACCAAGAGGAAATTGGTAAACTCTATGGTGCTCTTCTAAATTGTTATGTCAGGGAAGGGCTTGTAGATAAGGCCCTTTCCCATATGCAGAAGATGAAAGAGATGGGTTTTGCTTCCTCTCCCCTCTGCTACAATGATATAATGTGTCTATATTTGAACACTGGCCAGGTCGATAAAGTTCCGAATGTACTTTCTGAAATGAAGGATAATGGTGTTCTTCCTGACAATTATAGCTATAGAATTTGCATCAGCTCTTATGGAGCTAGGTCTGATCTAATCGGTATGCTGAAGGTTTTGAAAGAAATGGAGAGTCAAACTCACATATCTATGGACTGGACTACTTATTCAATGGTTGCCAATTTTTTCATAAAGGCTGGTATGCACGAGCAAGCAATGAGTTACCTTCGGAAATGCGAGGACAAGGTCAACCAAGATGCTCTCGGCTTCAATCACCTCATTTCACTTTACACCAGTCTGGGACGTAAAGACGAAGTAATGAGACTGTGGGCTCTCCAAAAGAAGTGCAAGAAGCAAGTCAATAGGGATTATATAACCATGTTGGGTTGTTTGGTTAAGCTTGAGTTTCTTGAGGAAGCTGAGAAATTGGTTGAGGAATGGGAGTCATCTTGCGAGTGTTATGATTTTCGAGTTCCGAATGTTCTTCTCATTGGATACTCGCAAAGGGGGCTAATTGAAAGAGCAGAAAAGATGCTTCAAAACATCATCAGTGATGGGAGGATTCCACCACCCAATAGTTGGGGCATTATTGCAGCAGGGTACTTGGAGAAGCAGAACCCGGAGAGAGCTTTCAAGTGCATGAAGGAAGCTGTAGCTGTACAAGAGCAAAACAAAGGGTGGAGGCCCAAACCTAGCGTCTTATCAAGCATACTGCGATGGCTATCTGAAAATGGAAGATATGAGGAGCTGAAAGAGTTTCTGAGCTCATTGAAGGCTGTTCCTTCCATGGACGGAAAACTAAGTAATGCCTTCGATGAGCTTCTGGAAACCTTGAAAAACAATGATGAAACAACGGCCGATGCTCTTAAGAAATCACAACCTTGTTTAGCTCAGGTAGATTAA 2205 47.3 MMVAMIYGNGGFVWVLHALFFMVVGGSFVHGDGGAWLDAHATFYGADQNPTSLGGACGYDNTFHAGFGINTAAVSGALFRGGEACGACFLVICNYNVDPKWCLRRRAVAITATNFCPSNNNGGWCDPPRAHFDMSSPAFLTIARQGNEGIVPVLYKRVSCRRKGGVRFTLRGQSNFNMVMISNVGGSGDIKAAWVKGSRTRTWMLMHRNWGANWQANVDLRNQIMSFKVSGAPALAAALAMFKILRSFSSGFTRTARTETDAFCFVALRLYSARRTCNRRNLFARISPLGSPELSVVPILDQWIQEGRMIKDFEMRRIVRDLRNCRRYGQALQVSEWMRSKGLFSFTTRDFAVQLDLIGRVRGIDSAEKYFSSVSNQEEIGKLYGALLNCYVREGLVDKALSHMQKMKEMGFASSPLCYNDIMCLYLNTGQVDKVPNVLSEMKDNGVLPDNYSYRICISSYGARSDLIGMLKVLKEMESQTHISMDWTTYSMVANFFIKAGMHEQAMSYLRKCEDKVNQDALGFNHLISLYTSLGRKDEVMRLWALQKKCKKQVNRDYITMLGCLVKLEFLEEAEKLVEEWESSCECYDFRVPNVLLIGYSQRGLIERAEKMLQNIISDGRIPPPNSWGIIAAGYLEKQNPERAFKCMKEAVAVQEQNKGWRPKPSVLSSILRWLSENGRYEELKEFLSSLKAVPSMDGKLSNAFDELLETLKNNDETTADALKKSQPCLAQVD 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4949678 4953724 + CmoCh04G009740.1 Cmo04g00974 379949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00974 734 Pfam PPR repeat 558 583 IPR002885 -
Cmo04g00974 734 Pfam PPR repeat 384 412 IPR002885 -
Cmo04g00974 734 Pfam PPR repeat 594 620 IPR002885 -
Cmo04g00974 734 Gene3D - 165 235 IPR036749 -
Cmo04g00974 734 SMART dpbb_1 71 155 IPR007112 -
Cmo04g00974 734 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 267 708 - -
Cmo04g00974 734 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Cmo04g00974 734 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Cmo04g00974 734 PRINTS Expansin signature 95 106 IPR002963 GO:0009664
Cmo04g00974 734 PRINTS Expansin signature 108 118 IPR002963 GO:0009664
Cmo04g00974 734 PRINTS Expansin signature 66 80 IPR002963 GO:0009664
Cmo04g00974 734 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Cmo04g00974 734 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Cmo04g00974 734 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Cmo04g00974 734 Pfam Lytic transglycolase 71 155 IPR009009 -
Cmo04g00974 734 PANTHER OS12G0527900 PROTEIN 267 708 - -
Cmo04g00974 734 SUPERFAMILY TPR-like 390 659 IPR011990 GO:0005515
Cmo04g00974 734 Gene3D - 25 161 IPR036908 -
Cmo04g00974 734 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Cmo04g00974 734 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Cmo04g00974 734 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Cmo04g00974 734 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Cmo04g00974 734 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Cmo04g00974 734 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Cmo04g00974 734 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 230 IPR007117 -
Cmo04g00974 734 Pfam PPR repeat family 418 460 IPR002885 -
Cmo04g00974 734 SUPERFAMILY Barwin-like endoglucanases 16 183 IPR036908 -
Cmo04g00974 734 Gene3D Tetratricopeptide repeat domain 298 465 IPR011990 GO:0005515
Cmo04g00974 734 Gene3D Tetratricopeptide repeat domain 466 546 IPR011990 GO:0005515
Cmo04g00974 734 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 165 IPR007112 -
Cmo04g00974 734 TIGRFAM PPR: pentatricopeptide repeat domain 383 412 IPR002885 -
Cmo04g00974 734 TIGRFAM PPR: pentatricopeptide repeat domain 418 450 IPR002885 -
Cmo04g00974 734 Pfam Expansin C-terminal domain 166 229 IPR007117 -
Cmo04g00974 734 Gene3D Tetratricopeptide repeat domain 557 728 IPR011990 GO:0005515
Cmo04g00974 734 SUPERFAMILY PHL pollen allergen 162 229 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00974 Cmo-Chr4:4949678 Cmo11g01950 Cmo-Chr11:13447319 2.29E-99 dispersed
Cmo13g00668 Cmo-Chr13:6992854 Cmo04g00974 Cmo-Chr4:4949678 5.19E-13 dispersed
Cmo04g00974 Cmo-Chr4:4949678 Cmo18g00344 Cmo-Chr18:2258000 1.37E-169 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00974 - - cmos:111447235 989.564