Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00999 ATGGCGGAGGAGTTTCAGAGCTCTGGAAATTGGTGGGACGCCACTAGAAGCCGCTACGAAGCAGGAATATCCCCTTCTTCCTCCGCCATAACTACTTTCGTCGACCACCCCGACTCCGGCGCCGGCGCAGGCGACCCCAATTTGCACATCATGGGCTTGGGCCTCGATTGGAACCAACCCCTCTTTCGGGGCGGCGGAGAGAAGGCGGCGGAGAGCAGTTTCCGGTCGATGCTGCAGCCGGATAATATGAATTTGAATATGCAAGAAACAGGGCAACATCACCAACACCAACAACAACAGATTCAATGGATGAGATCGGAGAAGCTATATTCAGGGGAATCTCCAGCGACTGAATTCAAGCCAATAAACAGAGGGTTTTCATTAGATCACCACAACCAGCCTCCGCCACAGTTCAGCCCTTCTCACTACAGCACCGGCGACAGCACCATCACCAGTTTTCCACTCGACACCGCCGCCGCAGCCGCCGCTTTGTACGGAAACTCCACAACACTATTACAAGGCTTATTAGCCGGCGGAGGCAGCGAGCAACAGCAAGTCTCGGGAGCGGGTATGAACTTCCCATACAATACCCATTTCGGAATGAACTCCAGCGAGTTGATGGCGGCAGCATCATGGTCGAACTCCAAAGTACCTCCGTTCTTAAGAAACTCACCACCAAAAGGAGCAGCACCGACGCCACCACAGAGTCAGTTACAGTTTTCTAACAACACAGCATTCTGGAACGCGTCAGACATGAAAGACGCGAGGGCGAGTTATATTCCGGCGTCGTACAACGCTGCAGCCTTGGCGGGAGATAAATCAAAGAGTAGATCAGAGGGTGGAAAGAAAAGTGGGAATGATCAGAATCAACAACAAACGGGTGGTGGTGGTGGTGCGGTTAAAAGGCCTCGAAATGAAACGGCGCCGGGATTGCCAGCGTTTAAGGTGAGGAAAGAGAAGATGGGGGACAGAATCACTGCGCTCCAACAACTGGTCTCACCTTTCGGAAAGACTGATACCGCTTCAGTGCTGTCTGAAGCCATTGAATACATAAAGTTCCTCCATGAACAAGTCAGTGTATTGAGCACTCCATATTTGAAGAGCGGAGGTGGCGCAGTAGTACAGCAGCAGCAGCAGAAATGGTGCGAGAAAAGGACGGAAGGAGAAGGAAAAGAAGAGGATCTAAGAAGCAGAGGGCTTTGTTTAGTTCCAGTTTCAAGTACATTTCCGGTGACCCACGAAACCACCGTCGATTTCTGGACTCCAAGCTTCGGAGGAACCTTCAGATAA 1290 51.63 MAEEFQSSGNWWDATRSRYEAGISPSSSAITTFVDHPDSGAGAGDPNLHIMGLGLDWNQPLFRGGGEKAAESSFRSMLQPDNMNLNMQETGQHHQHQQQQIQWMRSEKLYSGESPATEFKPINRGFSLDHHNQPPPQFSPSHYSTGDSTITSFPLDTAAAAAALYGNSTTLLQGLLAGGGSEQQQVSGAGMNFPYNTHFGMNSSELMAAASWSNSKVPPFLRNSPPKGAAPTPPQSQLQFSNNTAFWNASDMKDARASYIPASYNAAALAGDKSKSRSEGGKKSGNDQNQQQTGGGGGAVKRPRNETAPGLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVSVLSTPYLKSGGGAVVQQQQQKWCEKRTEGEGKEEDLRSRGLCLVPVSSTFPVTHETTVDFWTPSFGGTFR 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5033010 5035144 + CmoCh04G009990.1 Cmo04g00999 379974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00999 429 Gene3D - 315 368 IPR036638 GO:0046983
Cmo04g00999 429 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 305 354 IPR011598 GO:0046983
Cmo04g00999 429 PANTHER TRANSCRIPTION FACTOR BHLH123 44 419 - -
Cmo04g00999 429 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 315 366 IPR036638 GO:0046983
Cmo04g00999 429 MobiDBLite consensus disorder prediction 130 144 - -
Cmo04g00999 429 MobiDBLite consensus disorder prediction 218 239 - -
Cmo04g00999 429 MobiDBLite consensus disorder prediction 271 312 - -
Cmo04g00999 429 CDD bHLH_AtbHLH_like 311 362 IPR045239 -
Cmo04g00999 429 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 44 419 - -
Cmo04g00999 429 MobiDBLite consensus disorder prediction 120 144 - -
Cmo04g00999 429 SMART finulus 316 360 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00529 Cmo-Chr3:5415334 Cmo04g00999 Cmo-Chr4:5033010 5.07E-59 dispersed
Cmo04g00999 Cmo-Chr4:5033010 Cmo07g00281 Cmo-Chr7:1377637 8.84E-66 dispersed
Cmo16g00923 Cmo-Chr16:5660098 Cmo04g00999 Cmo-Chr4:5033010 8.86E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00999 - - csv:101220471 594.734