Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g01008 | ATGGAAATTCTCCATTTTTTGTTCATACATTTTTGGCTCCAACTGCGACACACTTCTCTTAACGCTGGCCTCTCTCTTCTCTCTTTCACTTTACTGCTTTCAATTCGACGAAAATTCACGCTGGAAACATCGCCCTTCCTGCTCAATCACCATCAACGCGATATGGTATCCCCTGAAACCACCAATTGGCTCTTTGATTATGCGTTAATCGATGATATTCCTGTTCCTGATGATGTCAATTTCTCTGCACCTACTGCCGGTTTCTCTTGGTCCATGCAACCCTTCAACGCCTCCTCTGATGTCAGTGCGGAAATTGAAGGATCATTGTTGGAATCAGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGGGTCAGAACTGAATCAAGTTGTGCATCTAGCTCAAAAGCATGTAGGGAGAAGCTGCGGAGGGACAGATTAAATGACAAATTTTTGGAATTGAGTGCTACTCTGGAGCCTGGAAGGGCACTGAAGACCGACAAGGCTGCCATTTTGATTGATGCTGTTCGAATGGTCACTCAGTTACGCGGTGAAGCCCAGGTGTTGAAGGACTCAAATACAAGCCTATTAGAGAAGATTAAAGATTTGAAGGCTGAGAAGAATGAGCTTCGTGATGAGAAGCATAGGCTAAAACTGGAGAAGGAGAAGTTGGAGCAGCAACTAAAAGCCACGAATTCACAACCTGGCTTCATGCCTCCAGCCATCCCTGCAACTTTTGCAGCACAAGGCCAAGCACCTGGAAACAAGTTGGTTCCCTTCATTGGCTACCCAGGAGTTGCCATGTGGCAGTTCATGCCACCTGCAGCTGTTGACACCTCGCAAGATCACGTACTTCGACCCCCTGTTGCTTAA | 870 | 46.67 | MEILHFLFIHFWLQLRHTSLNAGLSLLSFTLLLSIRRKFTLETSPFLLNHHQRDMVSPETTNWLFDYALIDDIPVPDDVNFSAPTAGFSWSMQPFNASSDVSAEIEGSLLESDGLKEPGSKKRVRTESSCASSSKACREKLRRDRLNDKFLELSATLEPGRALKTDKAAILIDAVRMVTQLRGEAQVLKDSNTSLLEKIKDLKAEKNELRDEKHRLKLEKEKLEQQLKATNSQPGFMPPAIPATFAAQGQAPGNKLVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA | 289 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5073534 | 5077676 | - | CmoCh04G010080.1 | Cmo04g01008 | 379983 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g01008 | 289 | Coils | Coil | 185 | 233 | - | - | |
Cmo04g01008 | 289 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 130 | 181 | IPR011598 | GO:0046983 | |
Cmo04g01008 | 289 | SMART | finulus | 136 | 187 | IPR011598 | GO:0046983 | |
Cmo04g01008 | 289 | PANTHER | TRANSCRIPTION FACTOR ILR3 | 55 | 289 | - | - | |
Cmo04g01008 | 289 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 134 | 195 | IPR036638 | GO:0046983 | |
Cmo04g01008 | 289 | CDD | bHLH_AtILR3_like | 138 | 210 | - | - | |
Cmo04g01008 | 289 | Pfam | Helix-loop-helix DNA-binding domain | 134 | 181 | IPR011598 | GO:0046983 | |
Cmo04g01008 | 289 | PANTHER | BHLH TRANSCRIPTION FACTOR | 55 | 289 | IPR044818 | GO:0003700|GO:0006355|GO:0046983|GO:0055072 | |
Cmo04g01008 | 289 | Gene3D | - | 133 | 209 | IPR036638 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01205 | Cmo-Chr1:9755296 | Cmo04g01008 | Cmo-Chr4:5073534 | 9.50E-112 | dispersed | |
Cmo04g01008 | Cmo-Chr4:5073534 | Cmo09g00921 | Cmo-Chr9:4812733 | 1.55E-104 | dispersed | |
Cmo16g00916 | Cmo-Chr16:5522341 | Cmo04g01008 | Cmo-Chr4:5073534 | 1.61E-140 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9586 | PF00010 | HLH | 3.20E-08 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g01008 | - | - | zju:107431674 | 345.125 |