Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01008 ATGGAAATTCTCCATTTTTTGTTCATACATTTTTGGCTCCAACTGCGACACACTTCTCTTAACGCTGGCCTCTCTCTTCTCTCTTTCACTTTACTGCTTTCAATTCGACGAAAATTCACGCTGGAAACATCGCCCTTCCTGCTCAATCACCATCAACGCGATATGGTATCCCCTGAAACCACCAATTGGCTCTTTGATTATGCGTTAATCGATGATATTCCTGTTCCTGATGATGTCAATTTCTCTGCACCTACTGCCGGTTTCTCTTGGTCCATGCAACCCTTCAACGCCTCCTCTGATGTCAGTGCGGAAATTGAAGGATCATTGTTGGAATCAGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGGGTCAGAACTGAATCAAGTTGTGCATCTAGCTCAAAAGCATGTAGGGAGAAGCTGCGGAGGGACAGATTAAATGACAAATTTTTGGAATTGAGTGCTACTCTGGAGCCTGGAAGGGCACTGAAGACCGACAAGGCTGCCATTTTGATTGATGCTGTTCGAATGGTCACTCAGTTACGCGGTGAAGCCCAGGTGTTGAAGGACTCAAATACAAGCCTATTAGAGAAGATTAAAGATTTGAAGGCTGAGAAGAATGAGCTTCGTGATGAGAAGCATAGGCTAAAACTGGAGAAGGAGAAGTTGGAGCAGCAACTAAAAGCCACGAATTCACAACCTGGCTTCATGCCTCCAGCCATCCCTGCAACTTTTGCAGCACAAGGCCAAGCACCTGGAAACAAGTTGGTTCCCTTCATTGGCTACCCAGGAGTTGCCATGTGGCAGTTCATGCCACCTGCAGCTGTTGACACCTCGCAAGATCACGTACTTCGACCCCCTGTTGCTTAA 870 46.67 MEILHFLFIHFWLQLRHTSLNAGLSLLSFTLLLSIRRKFTLETSPFLLNHHQRDMVSPETTNWLFDYALIDDIPVPDDVNFSAPTAGFSWSMQPFNASSDVSAEIEGSLLESDGLKEPGSKKRVRTESSCASSSKACREKLRRDRLNDKFLELSATLEPGRALKTDKAAILIDAVRMVTQLRGEAQVLKDSNTSLLEKIKDLKAEKNELRDEKHRLKLEKEKLEQQLKATNSQPGFMPPAIPATFAAQGQAPGNKLVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5073534 5077676 - CmoCh04G010080.1 Cmo04g01008 379983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01008 289 Coils Coil 185 233 - -
Cmo04g01008 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 181 IPR011598 GO:0046983
Cmo04g01008 289 SMART finulus 136 187 IPR011598 GO:0046983
Cmo04g01008 289 PANTHER TRANSCRIPTION FACTOR ILR3 55 289 - -
Cmo04g01008 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 195 IPR036638 GO:0046983
Cmo04g01008 289 CDD bHLH_AtILR3_like 138 210 - -
Cmo04g01008 289 Pfam Helix-loop-helix DNA-binding domain 134 181 IPR011598 GO:0046983
Cmo04g01008 289 PANTHER BHLH TRANSCRIPTION FACTOR 55 289 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cmo04g01008 289 Gene3D - 133 209 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01205 Cmo-Chr1:9755296 Cmo04g01008 Cmo-Chr4:5073534 9.50E-112 dispersed
Cmo04g01008 Cmo-Chr4:5073534 Cmo09g00921 Cmo-Chr9:4812733 1.55E-104 dispersed
Cmo16g00916 Cmo-Chr16:5522341 Cmo04g01008 Cmo-Chr4:5073534 1.61E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9586 PF00010 HLH 3.20E-08 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01008 - - zju:107431674 345.125