Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01023 ATGAATTGCTTTCAATGTTGCTTGACAGACAAGAAAGTCGATAGAAAATCTCTGAAAAAGAGCATTAAGGAGTATCAGGACACAAAAGCTCTAACCTCTTTTGCCAACATTTCCTTTAAATCTGATAGCAGTCGACGAAGGTACATAACTGAGGAGATAAAGAAGTTAGGAAAAGGAAACATCACAGCTCAAACGTTTACATTTGGTGATCTAACCACTGCTACTAATAACTTCGACCATGAAAATCTATTGGGGGAAGGTGGTTTTGGAAGGGTGTACAAAGGCATCCTTGAAAGCACAAAACAAGTAACAGCTGTGAAGCAACTCGACCGAAATGGATTTCAAGGAAACAGAGAATTCCTTGTAGAGGTTTTGATGTTGAGCCTTCTTCACCATCCCAATCTTGTGAATTTGATTGGGTATTGTGCTGATGGGGATCAGAGGATCTTGGTTTATGAGTACATGGCTCACGGCTCCTTGGAAGATCATCTTCTTGATCTAGCGCCGGATAAGACGCCTCTGGACTGGAAGACGAGGATGAAAATTGCTGAAGGAGCAGCGAAAGGACTTGAATACTTACACGAAACTGCGAATCCTCCTGTGATATATCGCGATTTCAAAGCTTCGAACATATTGTTGGATGATGAATTCAATCCAAAGCTTTCTGATTTTGGTCTTGCAAAGTTAGGTCCTACTGGGGATAAATCTCATGTTTCCACTAGAGTGATGGGAACCTATGGTTATTGTGCTCCTGAATACGCACTCACAGGACAGTTAACAACGAAATCAGATGTTTACAGTTTTGGTGTCGTGTTTCTGGAAATAATAACTGGAAGACGAGTTATAGACAACGCGCGACCAACAGCAGAGCAAAACTTAATCACTTGGGCACAGCCTCTTTTCAAGGACAGAAGGAAATTTACACTCATGGCAGATCCAAAGCTAGAAGGAAACTATCCAGTGAAGGCTCTGTATCAAGCTCTGGCAGTGGCAGCCATGTGTTTACAAGAGGAAGCGGGTACACGGCCATTGATCAGTGATGTGGTTACAGCTATCGAATTTTTAGCTGCAGATAAGGATACCGATGCAGACGTAGATGACGAAGAGCCAGGTTTGATATCGGGAGCAGGTTTGGGTTCAGATTCTCCTGATAGAAGTAGTAGTAATGGTGATAAAAATGTTGATGTTGAGGCCCATTTGGCTAAACTATTATCATCACCAGCATTATCATCATCAAGGGTGGGTGAAAATTTCATATCAGCCATCATAAACAAAATCTTCACAAGGAATCAGGACTTGAACTGA 1305 41.84 MNCFQCCLTDKKVDRKSLKKSIKEYQDTKALTSFANISFKSDSSRRRYITEEIKKLGKGNITAQTFTFGDLTTATNNFDHENLLGEGGFGRVYKGILESTKQVTAVKQLDRNGFQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRILVYEYMAHGSLEDHLLDLAPDKTPLDWKTRMKIAEGAAKGLEYLHETANPPVIYRDFKASNILLDDEFNPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYALTGQLTTKSDVYSFGVVFLEIITGRRVIDNARPTAEQNLITWAQPLFKDRRKFTLMADPKLEGNYPVKALYQALAVAAMCLQEEAGTRPLISDVVTAIEFLAADKDTDADVDDEEPGLISGAGLGSDSPDRSSSNGDKNVDVEAHLAKLLSSPALSSSRVGENFISAIINKIFTRNQDLN 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5127032 5129724 + CmoCh04G010230.1 Cmo04g01023 379998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01023 434 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1-LIKE 3 369 - -
Cmo04g01023 434 Gene3D Phosphorylase Kinase; domain 1 38 154 - -
Cmo04g01023 434 SUPERFAMILY Protein kinase-like (PK-like) 64 361 IPR011009 -
Cmo04g01023 434 MobiDBLite consensus disorder prediction 363 392 - -
Cmo04g01023 434 CDD STKc_IRAK 84 353 - -
Cmo04g01023 434 Gene3D Transferase(Phosphotransferase) domain 1 155 372 - -
Cmo04g01023 434 PANTHER OS07G0668900 PROTEIN 3 369 - -
Cmo04g01023 434 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Cmo04g01023 434 Pfam Protein kinase domain 80 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01023 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Cmo04g01023 434 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01023 Cmo-Chr4:5127032 Cmo17g01367 Cmo-Chr17:10614486 6.76E-178 dispersed
Cmo19g01053 Cmo-Chr19:9149477 Cmo04g01023 Cmo-Chr4:5127032 6.32E-104 dispersed
Cmo01g00988 Cmo-Chr1:6539717 Cmo04g01023 Cmo-Chr4:5127032 1.99E-141 transposed
Cmo16g00903 Cmo-Chr16:5382706 Cmo04g01023 Cmo-Chr4:5127032 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74260 PF00069 Pkinase 9.50E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01023 - - csv:101212756 706.827