Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01027 ATGAACACTACAAGTCAATGTGGCTCTCTCTTGTCGAAGAAACTTGACAGAGACAAGGTGGACAAGCTCATCGCATGGAAAAATTGCTACTTTCAGGCAGCAAAGCCCTGGGGGAGATCTTCATTATTCTGGGGTATTGGCATAAACAAGATGGAGATGGAGAATCTTGGAGGTTCTTGTTTGAGGAGTAGAAGGTTAGAGAGGTGGTTCGATGCAAGATATGAGCCAAATAAGAAAGAAGCCCCAAAATGTTCAGTTGATGAACAGATATCAAAAAAGGAGAATGGTGATGATATATATGTGGATGATAATGGGTGGAGTTCTGTTCTGATATCATGTTTCAGAATTATCACTTGCTTTCTCACAATGATGGTTACTACTTTCTTTTGGGCTCTGATTATGCTTCTGCTCCTGCCATGGCCTTACCACAGGATTAGACAGGGCAATATATATGGCCACCTCACTGGGGGTATTGGCATAAACAAGATGGAGATGGAGAATCTTGGAGGTTCTTGTTTGAGGAGTAGAAGGTTAGAGAGGTGGTTCGATGCAAGATATGAGCCAAATAAGAAAGAAGCCCCAAAATGTTCAGTTGATGAACAGATATCAAAAAAGGAGAATGGTGATGATATATATGTGGATGATAATGGGTGGAGTTCTGTTCTGATATCATGTTTCAGAATTATCACTTGCTTTCTCACAATGATGGTTACTACTTTCTTTTGGGCTCTGATTATGCTTCTGCTCCTGCCATGGCCTTACCACAGGATTAGACAGGGCAATATATATGGCCACCTCACTGGTAGATTACTGATGTGGATACTTGGGAATCCAATAAAGATTGAAGGCTCTGAATATTCCAATGAGAGGGCTATTTACATTTGCAACCATGCATCCCCTTTGGACATTTTCCTCATAATGTGGCTGACACCCACAGGGTCTGTTGGCATTGCAAAAAAGGAGATCATATGGTACCCTCTGTTTGGACAACTTTACATTCTCGCTAACCATCTTCGTATCGATCGATCGAATCCAAACACAGCAGTTAAGTCCATGAAACAGGTAGCTCGAGTAGTTGCGGAGAACGATTTGTCGTTAATCATATTCCCTGAGGGTACTAGGTCCAAGGATGGAAGGCTGCTACCCTTCAAAAAGATGTGGATACTTGGGAATCCAATAAAGATTGAAGGCTCTGAATATTCCAATGAGAGGGCTATTTACATTTGCAACCATGCATCCCCTTTGGACATTTTCCTCATAATGTGGCTGACACCCACAGGGTCTGTTGGCATTGCAAAAAAGGAGATCATATGGTACCCTCTGTTTGGACAACTTTACATTCTCGCTAACCATCTTCGTATCGATCGATCGAATCCAAACACAGCAGTTAAGTCCATGAAACAGGTAGCTCGAGTAGTTGCGGAGAACGATTTGTCGTTAATCATATTCCCTGAGGGTACTAGGTCCAAGGATGGAAGGCTGCTACCCTTCAAAAAGGGCTTTGTCCATTTGGCATTGCAAACACAGCTTCCAATCGTTCCTATTGTCATGACTGGCACCCATCGAGCTTGGAGAAAGGGCAGCTTACATGTCCGACCAGCTCCTCTAACTGTGAAGTATCTACCTCCAATAACAACAGATAATTGGACAGTAGAAAAGATCGACAAACACGTGAAAATAGTACACGATACTTATGTCGAACACCTACCGGAGTCGCAAAGACCTCTTCAGCGATAA 1737 42.72 MNTTSQCGSLLSKKLDRDKVDKLIAWKNCYFQAAKPWGRSSLFWGIGINKMEMENLGGSCLRSRRLERWFDARYEPNKKEAPKCSVDEQISKKENGDDIYVDDNGWSSVLISCFRIITCFLTMMVTTFFWALIMLLLLPWPYHRIRQGNIYGHLTGGIGINKMEMENLGGSCLRSRRLERWFDARYEPNKKEAPKCSVDEQISKKENGDDIYVDDNGWSSVLISCFRIITCFLTMMVTTFFWALIMLLLLPWPYHRIRQGNIYGHLTGRLLMWILGNPIKIEGSEYSNERAIYICNHASPLDIFLIMWLTPTGSVGIAKKEIIWYPLFGQLYILANHLRIDRSNPNTAVKSMKQVARVVAENDLSLIIFPEGTRSKDGRLLPFKKMWILGNPIKIEGSEYSNERAIYICNHASPLDIFLIMWLTPTGSVGIAKKEIIWYPLFGQLYILANHLRIDRSNPNTAVKSMKQVARVVAENDLSLIIFPEGTRSKDGRLLPFKKGFVHLALQTQLPIVPIVMTGTHRAWRKGSLHVRPAPLTVKYLPPITTDNWTVEKIDKHVKIVHDTYVEHLPESQRPLQR 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5141883 5150880 - CmoCh04G010270.1 Cmo04g01027 380002

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01027 578 Pfam Acyltransferase 279 385 IPR002123 GO:0016746
Cmo04g01027 578 Pfam Acyltransferase 393 517 IPR002123 GO:0016746
Cmo04g01027 578 PANTHER 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 218 385 - -
Cmo04g01027 578 PANTHER 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 390 574 - -
Cmo04g01027 578 SMART plsc_2 405 520 IPR002123 GO:0016746
Cmo04g01027 578 SMART plsc_2 291 398 IPR002123 GO:0016746
Cmo04g01027 578 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 226 386 - -
Cmo04g01027 578 TIGRFAM AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 401 517 IPR004552 GO:0003841|GO:0008654|GO:0016020
Cmo04g01027 578 PANTHER 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE ALPHA 106 155 - -
Cmo04g01027 578 PANTHER 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 106 155 - -
Cmo04g01027 578 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 384 560 - -
Cmo04g01027 578 CDD LPLAT_AGPAT-like 386 555 - -
Cmo04g01027 578 PANTHER 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE ALPHA 218 385 - -
Cmo04g01027 578 PANTHER 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE ALPHA 390 574 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01027 K13509 AGPAT1_2; lysophosphatidate acyltransferase [EC:2.3.1.51] - csv:101217317 382.104
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01027 Cmo-Chr4:5141883 Cmo19g00435 Cmo-Chr19:5279701 6.49E-10 dispersed
Cmo04g01027 Cmo-Chr4:5141883 Cmo12g00433 Cmo-Chr12:2661900 4.72E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g506 . . . . Bpe09g00177 . Bma10g00546 Bma13g01055 . Cmo04g01027 . . . . . . . . . . . . . . Cla10g00508 Cam10g0503 Cec10g0520 Cco10g0507 Clacu10g0523 Cmu10g1349 Cre10g0754 . . Cone14ag1141 . . Csa03g00517 . Cme06g02256 Blo07g00907 Blo10g00829 Bda05g00723 Bda12g00906 . Bpe03g00793 . . . . . . . Car04g00894 . . Cpe01g00867 Bhi11g00622 . . . . Mch10g1268 . . . . . . . . Lsi05g00602 . Chy06g01813 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009452 2 2 2 2 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01027 Cmo_Chr04 FPKM 3.610772 3.683335 3.04949 3.53398 5.20155 5.871304 5.984642 7.836644 6.519765 5.057831