Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01031 ATGGCGTTTAATTCTCTAATCGTTATCGCCGAACAGTATCTGAGGTGCTCAGTGCGAAGAGTGAGGAGGAAAGCAGATCGGACAGAGATGGCTTGGTGTGCTGCTCGGGCTCTTCACATGCCGGCTTTGGACATCACTGCATTGCGCTCCAAGACTCCCTTAGCCGTCGGCGTCGGTTGTGCTTCGGTGGCTGGAACCACCTTGTGCCGATCTTCCTCAACTTCCAAGCGCCAAATTCCCTTCGCATCCCTCAGCATTTCTACCGATGCTAGTATCAAGGAAGCTGTTAAGACTGACAAGGCTCCAGCTGCATTAGGGCCATATTCTCAGGCTATCAAAGCTAACAACCTTCTCTTTGTGTCTGGTGTCTTAGGTTTGAATCCTGAGACAGGGAAATTTGTCTCAGATGATATTGAAGGCCAGACTGAGCAGGTCCTAAAAAATATGGGTGAAATATTGAAAGCTGGAGGTGCCGGCTATTCTTCCGTGGTCAAGACAACTATTATGTTGGCTGATCTGAAGGATTTCAAGAAAGTAAATGAGATTTATGGTAAATACTTTCCATCCCCTGCTCCTGCTCGGTCAACATATCAGGTTGCAGCGTTGCCTTTGGATGCTAAGGTTGAAATTGAGTGCATCGCTACACTTTGA 651 47.62 MAFNSLIVIAEQYLRCSVRRVRRKADRTEMAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTDASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVEIECIATL 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5159300 5163562 - CmoCh04G010310.1 Cmo04g01031 380006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01031 216 TIGRFAM TIGR00004: reactive intermediate/imine deaminase 93 215 IPR006056 -
Cmo04g01031 216 CDD YjgF_YER057c_UK114_family 108 214 - -
Cmo04g01031 216 PANTHER BNAA05G36080D PROTEIN 18 216 - -
Cmo04g01031 216 PANTHER 2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA 18 216 IPR006175 -
Cmo04g01031 216 Pfam Endoribonuclease L-PSP 99 215 IPR006175 -
Cmo04g01031 216 SUPERFAMILY YjgF-like 94 216 IPR035959 -
Cmo04g01031 216 ProSitePatterns Uncharacterized protein family UPF0076 signature. 192 210 IPR019897 -
Cmo04g01031 216 Gene3D - 88 215 IPR035959 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01031 K09022 ridA, tdcF, RIDA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] - csv:101215404 334.339
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01031 Cmo16g00896 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01031 Cmo-Chr4:5159300 Cmo16g00896 Cmo-Chr16:5204595 1.91E-49 dispersed
Cmo12g00966 Cmo-Chr12:9013530 Cmo04g01031 Cmo-Chr4:5159300 5.54E-06 transposed
Cmo16g00895 Cmo-Chr16:5194913 Cmo04g01031 Cmo-Chr4:5159300 7.75E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g511 . . . . Bpe09g00176 . Bma10g00548 . Cmo16g00896 Cmo04g01031 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1144 Cone15ag1162 . Csa03g00508 . . Blo07g00905 Blo10g00832 Bda05g00722 Bda12g00909 . . . . . . . Cma04g00958 Cma16g00866 Car04g00897 Car16g00843 . Cpe01g00870 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008766 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01031 Cmo_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0