Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01041 ATGAACCTGAGCATTGTTCTTTTCTGGATCATAGCGATCTCGATCCATATCGTTGGAGTTGTTTCTAAAACCAAAGCGCCAGATGGTACAATTTCTAAACCTATTCCCGTGAATGTGTTTGATAATAATAAATGTCTTTATCTCCATGAACTGATATTAGCTGGGTTAGGTCATAGGCATTACCACCATTTTGCTGCAGTTTCTGCACTGAACGTGATGTACAGTAGTTTAAATTCACCATCACAATTGTCTGGTTGGGGTTCAAGTGGGGGTGACCCATGTGGCGACTCTTGGGAAGGGATCCAATGCTCAGGAACATCCGTCACTGAAATACATTTATCAGGCTTTGGACTAAGTGGATCAATGGGTTACCAGCTCTCAAATTTGGTTTCTGTCACCTACTTTGATTTGAGCAAGAACAACCTCAATGGCGATATCCCGTATCAGCTTCCTCCTAATGCCGTTCATGTCGATCTTTCTGAAAACAGCTTCACTGGTAGCGTGCCTTATTCGATTTCTCAAATGGGTGATCTTAATTTTTTAAATCTTGCTCATAATCAGCTTAGTAACCAATTGAGTGACATGTTTGGCAAGCTTCCTAAACTTAAAAGTCTGGATCTCTCATACAACTCAATATCAGGAACCTTACCTCAAAGTTTTAACAAGCTTTCAAGCCTCACCACATTGCACCTTCAAGAGAATCAATTTAAAGGTTCAATTAATGTTCTTGCTGACCTTCCACTTGATGATCTGAACGTCGCAAATAACCAATTCACCGGATGGATTCCTGCGACTCTTGAGGACATTAATAATTTGGAAACTGTAGGAAATTCTTGGTCAACTGGGCCAGCTCCTCCTCCACCACCCGGCACAGCGGCCGCTAACAAAAAGTCCAACAAAGACAAGTCGAGCAACAAATCCTCAAGCATCAGCGGCCTGGTCATAGCTGGAATAGCGATGGGGGTTTTGGTATTAATCGCCATTCTCATTGCATTGATCTCGAGAAGGTCTCCTCCTTCCCATTATCTTGATGAAGACACAAACCCACACAGATCCTTCACTCCACTTACATCCCAAGAACTCACCAAAGGTTTGCACAATGGAGATGATAGAAAATCAATAAACTCAGATACCTCTGTTGACATAAAGGCTCTTCAGAAGGCTTCGAGTGGGCTTATTAGGCCTCCTCCGCCCTTTGATCCTGTTCAGGCCTTCAGTGATAATCAGTTTGCCAGCCGTCTCAACTCCAGAAGAAGCACTTCTGTTCGTGCCATTTCTTACTCCTTGGTTGATTTGCAAGCCGCTACAGCTAACTTTTCGACTGCTCGCCTTCTTGGTGAGGGCACTATTGGACGTGTCTATAAGGCCAAGTATGGAGATGGAAAGGTCTTAGCTGTGAAGAAGATAGATTCATCAGTTTTTGAAGGAAGAAGAAAAGAAGAATTTTCAGAAGTAGTTGCAATTGTCTCAAAGCTTCGCCACACAAACCTTACAGAAGTGGTTGGTTTTTGTTCAGAACAGGGACATAACATGCTGCTTTACCAATATTTCATGAATGGTTCACTTCATGAGTTTCTACATATGTCTGATGACTTCAGTAAACCACTCACATGGAATACTCGAGTCAGAATCGCTTTGGGGACAGCCCGAGCTCTTGAGTACCTTCATGAAGTTTGCTCACCATCTATAATTCACATGAATATCAAGTCCTCGAATATATTGCTCGATACCGATCTCAACCCTCGAATATCAGACTATGGTTTGGCCACTTTTTATAAGAATAGAAGGGAAGTCCCTGGAGTTGGATATGATGCTCCAGAATGCAAAAAGGGTTCAAGTTATACAATGAAGAGTGACATTTACAGTGTGGGAGTGGTGATGTTGGAATTGTTGACAGGGCGGATGCCGTTTGACTCTTCGAAGGCAAGGGTGGAGCAAAGTCTAGTCCGGTGGGCTACCCCACAGCTGCACGACATAGATGCATTGGACAAAATGGTGGATCCAGCATTGAGAGGGTTATATCCACCAAAATCAGTGTCTAGATTTGCAGATATCATTGCCCTTTGTGTTCAATCAGAGCCTGAATTTCGGCCTCCCTCGTCGGAGGTGGTGCAAGCCTTGGTAACTTTGGTTCAACGATCCAGTATGAATGTGAGAGATGATCTTGGAAGCTCCCGACGAGTGGATGATTATGACTATTAA 2202 43.28 MNLSIVLFWIIAISIHIVGVVSKTKAPDGTISKPIPVNVFDNNKCLYLHELILAGLGHRHYHHFAAVSALNVMYSSLNSPSQLSGWGSSGGDPCGDSWEGIQCSGTSVTEIHLSGFGLSGSMGYQLSNLVSVTYFDLSKNNLNGDIPYQLPPNAVHVDLSENSFTGSVPYSISQMGDLNFLNLAHNQLSNQLSDMFGKLPKLKSLDLSYNSISGTLPQSFNKLSSLTTLHLQENQFKGSINVLADLPLDDLNVANNQFTGWIPATLEDINNLETVGNSWSTGPAPPPPPGTAAANKKSNKDKSSNKSSSISGLVIAGIAMGVLVLIAILIALISRRSPPSHYLDEDTNPHRSFTPLTSQELTKGLHNGDDRKSINSDTSVDIKALQKASSGLIRPPPPFDPVQAFSDNQFASRLNSRRSTSVRAISYSLVDLQAATANFSTARLLGEGTIGRVYKAKYGDGKVLAVKKIDSSVFEGRRKEEFSEVVAIVSKLRHTNLTEVVGFCSEQGHNMLLYQYFMNGSLHEFLHMSDDFSKPLTWNTRVRIALGTARALEYLHEVCSPSIIHMNIKSSNILLDTDLNPRISDYGLATFYKNRREVPGVGYDAPECKKGSSYTMKSDIYSVGVVMLELLTGRMPFDSSKARVEQSLVRWATPQLHDIDALDKMVDPALRGLYPPKSVSRFADIIALCVQSEPEFRPPSSEVVQALVTLVQRSSMNVRDDLGSSRRVDDYDY 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5192239 5197473 - CmoCh04G010410.1 Cmo04g01041 380016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01041 733 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 57 729 - -
Cmo04g01041 733 SMART LRR_typ_2 175 198 IPR003591 -
Cmo04g01041 733 SMART LRR_typ_2 223 245 IPR003591 -
Cmo04g01041 733 SMART LRR_typ_2 129 157 IPR003591 -
Cmo04g01041 733 SMART LRR_typ_2 199 222 IPR003591 -
Cmo04g01041 733 MobiDBLite consensus disorder prediction 275 307 - -
Cmo04g01041 733 Pfam Protein kinase domain 440 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01041 733 SUPERFAMILY L domain-like 68 274 - -
Cmo04g01041 733 Gene3D Transferase(Phosphotransferase) domain 1 517 729 - -
Cmo04g01041 733 PANTHER OS01G0253100 PROTEIN 57 729 IPR045271 GO:0004714|GO:0006468
Cmo04g01041 733 Pfam Leucine rich repeat N-terminal domain 67 104 IPR013210 -
Cmo04g01041 733 ProSiteProfiles Protein kinase domain profile. 439 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01041 733 Pfam Leucine rich repeat 194 236 IPR001611 GO:0005515
Cmo04g01041 733 SUPERFAMILY Protein kinase-like (PK-like) 419 707 IPR011009 -
Cmo04g01041 733 Gene3D Ribonuclease Inhibitor 65 313 IPR032675 -
Cmo04g01041 733 Gene3D Phosphorylase Kinase; domain 1 403 516 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01041 Cmo-Chr4:5192239 Cmo15g01506 Cmo-Chr15:10197461 0 dispersed
Cmo04g01041 Cmo-Chr4:5192239 Cmo14g01254 Cmo-Chr14:10564460 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74262 PF00069 Pkinase 5.50E-42 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01041 - - csv:101209107 1093.95