Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01044 ATGGAATCAAAGTCTTCGTTCAGCGATTCAAGGAGAAACTTGTATGTTTCTTCAAGTTGGTTAGAGTTTGTGTTGGCCCTGGAGAAAATGAGGACTGGGAACCGAAAGAGGAAGCTAAGGCTAAGCAAGATCTATTCATTTGCTTGTGGAAGAACTTCATTGAAAGATGAAGATCATTCACAAATTGGGATGCTCGGGTTCTCCCGGGTGGTTTTCTGTAATGATCCTGATTGTTTGGAGGCTGGTATGCGTAATTATGTTAACAACTCTATCAGTTCTACAAAGTACACACCCATCACTTTTGTGCCCAAGTCGCTGTTTGAGCAGTTCAGGAGGGTGGCTAATTTTTACTTCTTGATTGCTGGTATATTAGCCTTCACTCCTCTTGCTCCTTATACTGCTGTCAGTGCAATTGTCCCTCTTATTGCAGTCATTATTGCGACAATGGTTAAAGAAGGTGTTGAAGATTGGAGACGAAAAGCACAGGATATTGAGGTGAATAATAGAATGGTTAAAGTTCATCAAGGCAATGGAGTCTTCGATAATACTGAATGGAAAACTTTGAGGGTTGGAGATATAGTGAAGGTTGAAAAGGATCAATACTTTCCAGCCGACCTTCTTTTGATTTCATCCTGCTATGAGGATGGAATCTGTTATGTAGAAACGATGAACCTTGATGGGGAAACAAATTTAAAGGTAAAGCAAGCACTCGATACAACTGCATTTGCACGTGAGGATTCTAACTTTTTTGACTTTAAGGCTACAATCAAATGTGAAGACCCAAATGCAAATCTTTATACCTTTGTTGGGAGTATGGACTTTGAAGATCAACAATATCCACTTTCTCCACAAAATCTTCTCCTGAGAGACTCCAAACTCCGGAACACAGAATATATATATGGGGCTGTTGTCTTTACTGGCCATGATTCAAAGGTTATTCAAAATTCTACTGATCCACCTTCTAAGAGAAGCAAAGTTGAGAAGAAGATGGATAAAATTATATATCTGTTGTTTAGCTGTCTATTCATGCTGGCCTTCATTGGATCTATAGTCTTCGGAGTTATGACTAAAGATGATCTTAAAAATGGGAGGACAAAGAGATGGTACCTTAGACCAGATGATTCTACTATTTACTTTGACCCCAAAAATGCACCAGCTGCTGCAATTTTCCACTTTCTGTCAGCACTGATGTTGTATAACTACTTTATCCCTATATCCTTGTATGTGTCTATAGAAGTTGTCAAAGTTCTTCAGAGTATCTTCATCAATCAAGACATTCACATGTATTATGAAGAAGCTGACAAACCAGCACATGCCCGCACCTCCAATTTGAATGAGGAACTTGGTCAAGTTGACACCATACTCTCTGACAAGACCGGAACTTTGACCTGTAACTCAATGGAGTTTATCAAGTGTTCTGTGGCTGGAACAGCTTATGGCAGCGGAGTCACTGAAACTGAGAGAGCTATGGAAAGCAGAAATGGCATGCCAATGCTTTATGGAAATGACAATGGAAACACCTATAAGCACAATGAGGATGCTACAGATACAACTCCCTCTGTCAAAGGCTTTAATTTTAAGGACAATAGGATTATGAACGGAAACTGGGTTAATGAACCTCATGCAGATGTCATCCAGAAGTTCTTCCGCCTCCTTGCTACTTGTCAAACAGCTATTCCAGATGTTGATGAAAACACAGGCAAGGTTTCATATGAAGCTGAATCGCCAGATGAAGCAGCATTTGTAATTGCTGCCAGAGAAATTGGTTTCGAATTCTTCCAGAGGACACAGACAAGTATATCGATTCGTGAACTCGATCCTAGGTCTGGAAGGAAGGTTGAAAGGTCATATAAGCTTTTAAATGTTCTGGAGTTTAATAGCGCCCGGAAGAGGATGTCTGTTATAATAAGAGATGAAGAAGGGAAAGTACTATTACTATGCAAAGGTGCTGACAGTGTCATGTTTGAGAGGCTTGCCAAGAATGCTTGTAAATTTGAAGAGAAAACGAAGGACCATATCAATGAGTACGCTGATGCAGGGCTAAGGACCTTGGTACTTGCTTATCGTGAACTTGATGAGGAGGAATACAAGTTATTTGATAGGCAATTCTATGAAGCCAAGAATTCAGTTAGTGCAGAGAGGGATTCATTGATTGATAAAGTAACAGATCGCATTGAAAGGGATTTAATTCTTCTTGGTTCCACAGCAGTTGAGGACAAGCTTCAAAATGGAGTCCCTGAATGCATAGACAAACTTGCTCAAGCTGGGATTAAGATCTGGGTTTTGACTGGGGACAAGATGGAGACTGCGGTCAATATTGGTTTTGCCTGCAGTTTGCTTAGACAAGGAATGAAACAGATTATTGTATCTCTGGAAACACCAGAAATTCAGGCCTTAGAAAGGACGGGAGAGAAGGATATGATCAGTAAGGCATCAAAAGAAAGTGTCATCCACAAGATAACTCGGGCAAGGTCTCAGCTCACTGCATCAAGTGGAAGCGCAGAGGCTTATGCATTGATAATTGATGGGAAGTCACTTACTTATGCTCTAGAGGATGATGTGAAGGATGCATTCCTTGAGCTTGCAATTGGATGTGCATCTGTTATTTGCTGTCGCTCATCACCAAAGCAGAAAGCAATGGTCACTCGATTGGTTAAACTTGCAACGGGGAAAACAACATTAGCAATTGGTGATGGCGCAAATGATGTTGGAATGCTTCAGGAAGCAGATATTGGCATTGGAATTAGTGGTGCCGAAGGAATGCAGGCTGTCATGTCGAGTGATATTGCAATTGCTCAGTTCAGATATTTGGAGCGTCTACTACTTGTACATGGACATTGGTGCTACAGGAGATTGTCATCAATGATATGCTACTTTTTCTACAAGAATTTTACCTTTGGTTTTACACTTTTCTTATACGAGGCATACACTTCATTCTCTGCACAACCTGCATATAACGATTGGTTTATGTCACTCTACAATGTTGTGTTCTCCGCACTGCCAGTTGTGGCTCTTGGGGTGTTTGACCAGGACGTGTCTGCAAGATATTGCCTTAAGTTTCCTATGTTGTACCAGCAAGGTGTTCAGAATGTCCTCTTCAGCTGGGCCCGGATACTCAGCTGGATGTTTAATGGTTTGTGCAGTGCGTTGATCATTTTCTTTTTCTGCACAAATGGAATGAAGCATCAGGCACTTAACCCCGATGGGAAAACTGTGGGGAGAGATATCCTTGGAGCGACAATGCTGTCATGTGTTGTTTGGGTCGTCAACTTGCAGATGGCACTCTCTGTTAGCTACTTCACCTTGTTACAACATATTTTCATCTGGGCTTCAATCTTTATCTGGTACCTCTTTTTGATGATATATGGAGCCTTCCCTGCCAACATTTCAGGAAATGCATATCGTGTGTTCCTCGAAGCCCTTGCTCCTGCCGGGTCTTATTGGGTTCTGCTGATCTTTGTGGTGATCTCTACTCTCATTCCATTCTTTGTATACTCAGCATTACAGGTGAATTTCTTTCCGATGTACCATGAAAAAATACAGTGGATCAGGCACGATGGTAAGGGTCAGATAGACAATCCTGAGTTTGTCAATATGGTCAGGCAAAGCTCGTTGAAACCAACAACTGTCGGCTTCACTGCTCGTTGGGCAGCCAAAATAAGAAGAGATAATTCATAG 3678 41.35 MESKSSFSDSRRNLYVSSSWLEFVLALEKMRTGNRKRKLRLSKIYSFACGRTSLKDEDHSQIGMLGFSRVVFCNDPDCLEAGMRNYVNNSISSTKYTPITFVPKSLFEQFRRVANFYFLIAGILAFTPLAPYTAVSAIVPLIAVIIATMVKEGVEDWRRKAQDIEVNNRMVKVHQGNGVFDNTEWKTLRVGDIVKVEKDQYFPADLLLISSCYEDGICYVETMNLDGETNLKVKQALDTTAFAREDSNFFDFKATIKCEDPNANLYTFVGSMDFEDQQYPLSPQNLLLRDSKLRNTEYIYGAVVFTGHDSKVIQNSTDPPSKRSKVEKKMDKIIYLLFSCLFMLAFIGSIVFGVMTKDDLKNGRTKRWYLRPDDSTIYFDPKNAPAAAIFHFLSALMLYNYFIPISLYVSIEVVKVLQSIFINQDIHMYYEEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGSGVTETERAMESRNGMPMLYGNDNGNTYKHNEDATDTTPSVKGFNFKDNRIMNGNWVNEPHADVIQKFFRLLATCQTAIPDVDENTGKVSYEAESPDEAAFVIAAREIGFEFFQRTQTSISIRELDPRSGRKVERSYKLLNVLEFNSARKRMSVIIRDEEGKVLLLCKGADSVMFERLAKNACKFEEKTKDHINEYADAGLRTLVLAYRELDEEEYKLFDRQFYEAKNSVSAERDSLIDKVTDRIERDLILLGSTAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAVNIGFACSLLRQGMKQIIVSLETPEIQALERTGEKDMISKASKESVIHKITRARSQLTASSGSAEAYALIIDGKSLTYALEDDVKDAFLELAIGCASVICCRSSPKQKAMVTRLVKLATGKTTLAIGDGANDVGMLQEADIGIGISGAEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRLSSMICYFFYKNFTFGFTLFLYEAYTSFSAQPAYNDWFMSLYNVVFSALPVVALGVFDQDVSARYCLKFPMLYQQGVQNVLFSWARILSWMFNGLCSALIIFFFCTNGMKHQALNPDGKTVGRDILGATMLSCVVWVVNLQMALSVSYFTLLQHIFIWASIFIWYLFLMIYGAFPANISGNAYRVFLEALAPAGSYWVLLIFVVISTLIPFFVYSALQVNFFPMYHEKIQWIRHDGKGQIDNPEFVNMVRQSSLKPTTVGFTARWAAKIRRDNS 1225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5203567 5210440 - CmoCh04G010440.1 Cmo04g01044 380019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01044 1225 CDD P-type_ATPase_APLT_Dnf-like 88 1056 - -
Cmo04g01044 1225 Pfam Phospholipid-translocating ATPase N-terminal 71 137 IPR032631 -
Cmo04g01044 1225 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 531 733 IPR023299 GO:0000166
Cmo04g01044 1225 SFLD p-type atpase 437 947 IPR044492 -
Cmo04g01044 1225 SUPERFAMILY Calcium ATPase, transduction domain A 170 314 IPR008250 -
Cmo04g01044 1225 SUPERFAMILY HAD-like 450 951 IPR036412 -
Cmo04g01044 1225 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 9-RELATED 34 1222 - -
Cmo04g01044 1225 Pfam Cation transport ATPase (P-type) 565 658 - -
Cmo04g01044 1225 SUPERFAMILY Calcium ATPase, transmembrane domain M 85 1173 IPR023298 -
Cmo04g01044 1225 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 86 1181 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cmo04g01044 1225 Gene3D - 578 730 IPR023299 GO:0000166
Cmo04g01044 1225 Pfam E1-E2 ATPase 168 413 - -
Cmo04g01044 1225 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 34 1222 - -
Cmo04g01044 1225 Gene3D - 142 317 - -
Cmo04g01044 1225 SFLD Haloacid Dehalogenase 437 947 - -
Cmo04g01044 1225 Pfam Phospholipid-translocating P-type ATPase C-terminal 924 1174 IPR032630 -
Cmo04g01044 1225 ProSitePatterns E1-E2 ATPases phosphorylation site. 457 463 IPR018303 -
Cmo04g01044 1225 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 862 980 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo04g01044 1225 Gene3D - 731 936 IPR023214 -
Cmo04g01044 1225 PRINTS P-type cation-transporting ATPase superfamily signature 455 469 - -
Cmo04g01044 1225 PRINTS P-type cation-transporting ATPase superfamily signature 896 915 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01044 Cmo-Chr4:5203567 Cmo15g01500 Cmo-Chr15:10177017 0 dispersed
Cmo04g01044 Cmo-Chr4:5203567 Cmo18g01081 Cmo-Chr18:11365450 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01044 K01530 - csv:101205800 2239.15