Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g01048 | ATGGCTGCATCTTCTTCTTCCTCACTTCCAGTTTATGGCGTTGGAGAAGAATCAACTCCCCAGATGAGGCCTCCCTCTAATTCTTCCACTAAGAAAAAAAGAAACCAACCAGGAACTCCAAGCAAGTATTACCCAGATGCGGAGGTCATAGCCTTGAGTCCCAAGACCCTAATGGCTACGAACAGATTCATTTGCGAAGTTTGTAACAAAGGGTTTCAAAGAGAGCAAAACCTTCAGCTTCATAGACGAGGTCACAACTTGCCTTGGAAGTTAAAGCAAAAGTCCACTAAAGACCCTAAGCGCAAGGTTTACTTGTGTCCTGAACCCACATGCGTCCACCACCACCCTTCCAGGGCGCTTGGTGACTTAACCGGCATCAAAAAACACTACTCTAGAAAACATGGGGAGAAGAAATGGAAGTGTGATAAGTGCTCTAAGCGTTACGCTGTTCAGTCCGACTGGAAAGCTCACTCCAAAACGTGCGGTACTCGCGAGTATCGCTGCGATTGTGGCACTCTCTTCTCCAGACGGGATAGTTTTATTACTCATAGAGCTTTTTGTGATGCATTGGCTCAAGAGAGTGCTAGGCATCCTCCGAGTATTGGAAGGCATTTATATGGAGCACAAGACCATCCCAATATCATTAGCCAATCTGCTCCTGGACACTTTACTCATCTCCTTCCTTCATCCATGGGGTCTTCCTTTCGGCCGATGTCAGCGTCGGGGTTCTTCTTGACGGAGCAGAATAATCAGAGTAGCTTCCATGAGGATCAGCCAAACCAATCCCAACAAGGGTTCTTTGGAAACAAGGGGTTTCATGGGGTGATGCAATTCCCTGATATGCAATCCCATACCAATAATTGCGCTTCCAATGTCTTCAATTTGGGGTTCATTCCAAATTCTACTACCGATGGTACTACCAATTTGAACAATAACAACGACACCAACACTATTAGTACCAATTTGAATCAATTCAGTGCCGCAAACAATGGCAACAATGAAGCTGCTGCCTCTAACATTTTCGCGGTGATCGGCGATCAGATGAATTCAGCTGCACTCCCATCTCTCTACAGCAATGCCTCGGCTGTCGGCGGTGGAGGCGGTAGTGGTATCGGTGGTTTGTTCCCACATATGTCGGCGACAGCACTTCTTCAGAAGGCAGCTCAATTGGGTTCAACGACGTCGGGTAGCAACACGACATCGACGTTGCTAAGGTCGTTTGGAAGCTCCTCGAACTCAGGGGGGAAAGTGTCAGACAGAACGCTTTTCCCATTGGGTTACGGAGGAGTAACATTCGGGGAACATGAGAGCAATCTTCAGGATATGATGAATTCATTTGGAAGCGGGAGCTCGGGAAGTGGGATGTTCGGGAGCGGGATGAACTCGTTCGGTGGATTGGAGTGTAGTAGTAGTAGAACCAATATGGAAACGTTGGAGGATCCAAAGTTACAACAGGATGTAAGAGGAGTGAGGATGGGAGGGACAGATAGGTTAACAAGAGACTTCCTAGGCGTTGGACAGATTGTAAGAAGCATGAGTGGCGGCGGAGGCGGTTATTCACAGAAACAAGGGGCGGAGGGGATGGTTTTGGAGGGAAATGAGAGGAATTCAGCGCCGTCAAGTCAAGGTTTTGGTGGTGGAAATGGAAACTACCAGTGA | 1659 | 47.8 | MAASSSSSLPVYGVGEESTPQMRPPSNSSTKKKRNQPGTPSKYYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKDPKRKVYLCPEPTCVHHHPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPPSIGRHLYGAQDHPNIISQSAPGHFTHLLPSSMGSSFRPMSASGFFLTEQNNQSSFHEDQPNQSQQGFFGNKGFHGVMQFPDMQSHTNNCASNVFNLGFIPNSTTDGTTNLNNNNDTNTISTNLNQFSAANNGNNEAAASNIFAVIGDQMNSAALPSLYSNASAVGGGGGSGIGGLFPHMSATALLQKAAQLGSTTSGSNTTSTLLRSFGSSSNSGGKVSDRTLFPLGYGGVTFGEHESNLQDMMNSFGSGSSGSGMFGSGMNSFGGLECSSSRTNMETLEDPKLQQDVRGVRMGGTDRLTRDFLGVGQIVRSMSGGGGGYSQKQGAEGMVLEGNERNSAPSSQGFGGGNGNYQ | 552 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5233890 | 5235765 | - | CmoCh04G010480.1 | Cmo04g01048 | 380023 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g01048 | 552 | Pfam | Zinc-finger double-stranded RNA-binding | 63 | 85 | IPR022755 | - | |
Cmo04g01048 | 552 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Cmo04g01048 | 552 | SUPERFAMILY | beta-beta-alpha zinc fingers | 62 | 159 | IPR036236 | - | |
Cmo04g01048 | 552 | Gene3D | Classic Zinc Finger | 45 | 111 | - | - | |
Cmo04g01048 | 552 | PANTHER | ZINC FINGER PROTEIN, PUTATIVE-RELATED | 19 | 515 | - | - | |
Cmo04g01048 | 552 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Cmo04g01048 | 552 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 63 | 85 | IPR013087 | - | |
Cmo04g01048 | 552 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 19 | 515 | - | - | |
Cmo04g01048 | 552 | MobiDBLite | consensus disorder prediction | 513 | 552 | - | - | |
Cmo04g01048 | 552 | SMART | c2h2final6 | 139 | 159 | IPR013087 | - | |
Cmo04g01048 | 552 | SMART | c2h2final6 | 104 | 134 | IPR013087 | - | |
Cmo04g01048 | 552 | SMART | c2h2final6 | 63 | 85 | IPR013087 | - | |
Cmo04g01048 | 552 | Gene3D | Classic Zinc Finger | 113 | 196 | - | - | |
Cmo04g01048 | 552 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 65 | 85 | IPR013087 | - | |
Cmo04g01048 | 552 | MobiDBLite | consensus disorder prediction | 534 | 552 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g01048 | Cmo-Chr4:5233890 | Cmo18g00662 | Cmo-Chr18:8407004 | 0 | dispersed | |
Cmo04g01048 | Cmo-Chr4:5233890 | Cmo14g00196 | Cmo-Chr14:889620 | 3.19E-104 | transposed | |
Cmo04g01048 | Cmo-Chr4:5233890 | Cmo08g00317 | Cmo-Chr8:1974557 | 1.44E-104 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9589 | PF12171 | zf-C2H2_jaz | 3.40E-05 | CL0361 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g01048 | K25870 | - | csv:116401647 | 726.857 |