Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01048 ATGGCTGCATCTTCTTCTTCCTCACTTCCAGTTTATGGCGTTGGAGAAGAATCAACTCCCCAGATGAGGCCTCCCTCTAATTCTTCCACTAAGAAAAAAAGAAACCAACCAGGAACTCCAAGCAAGTATTACCCAGATGCGGAGGTCATAGCCTTGAGTCCCAAGACCCTAATGGCTACGAACAGATTCATTTGCGAAGTTTGTAACAAAGGGTTTCAAAGAGAGCAAAACCTTCAGCTTCATAGACGAGGTCACAACTTGCCTTGGAAGTTAAAGCAAAAGTCCACTAAAGACCCTAAGCGCAAGGTTTACTTGTGTCCTGAACCCACATGCGTCCACCACCACCCTTCCAGGGCGCTTGGTGACTTAACCGGCATCAAAAAACACTACTCTAGAAAACATGGGGAGAAGAAATGGAAGTGTGATAAGTGCTCTAAGCGTTACGCTGTTCAGTCCGACTGGAAAGCTCACTCCAAAACGTGCGGTACTCGCGAGTATCGCTGCGATTGTGGCACTCTCTTCTCCAGACGGGATAGTTTTATTACTCATAGAGCTTTTTGTGATGCATTGGCTCAAGAGAGTGCTAGGCATCCTCCGAGTATTGGAAGGCATTTATATGGAGCACAAGACCATCCCAATATCATTAGCCAATCTGCTCCTGGACACTTTACTCATCTCCTTCCTTCATCCATGGGGTCTTCCTTTCGGCCGATGTCAGCGTCGGGGTTCTTCTTGACGGAGCAGAATAATCAGAGTAGCTTCCATGAGGATCAGCCAAACCAATCCCAACAAGGGTTCTTTGGAAACAAGGGGTTTCATGGGGTGATGCAATTCCCTGATATGCAATCCCATACCAATAATTGCGCTTCCAATGTCTTCAATTTGGGGTTCATTCCAAATTCTACTACCGATGGTACTACCAATTTGAACAATAACAACGACACCAACACTATTAGTACCAATTTGAATCAATTCAGTGCCGCAAACAATGGCAACAATGAAGCTGCTGCCTCTAACATTTTCGCGGTGATCGGCGATCAGATGAATTCAGCTGCACTCCCATCTCTCTACAGCAATGCCTCGGCTGTCGGCGGTGGAGGCGGTAGTGGTATCGGTGGTTTGTTCCCACATATGTCGGCGACAGCACTTCTTCAGAAGGCAGCTCAATTGGGTTCAACGACGTCGGGTAGCAACACGACATCGACGTTGCTAAGGTCGTTTGGAAGCTCCTCGAACTCAGGGGGGAAAGTGTCAGACAGAACGCTTTTCCCATTGGGTTACGGAGGAGTAACATTCGGGGAACATGAGAGCAATCTTCAGGATATGATGAATTCATTTGGAAGCGGGAGCTCGGGAAGTGGGATGTTCGGGAGCGGGATGAACTCGTTCGGTGGATTGGAGTGTAGTAGTAGTAGAACCAATATGGAAACGTTGGAGGATCCAAAGTTACAACAGGATGTAAGAGGAGTGAGGATGGGAGGGACAGATAGGTTAACAAGAGACTTCCTAGGCGTTGGACAGATTGTAAGAAGCATGAGTGGCGGCGGAGGCGGTTATTCACAGAAACAAGGGGCGGAGGGGATGGTTTTGGAGGGAAATGAGAGGAATTCAGCGCCGTCAAGTCAAGGTTTTGGTGGTGGAAATGGAAACTACCAGTGA 1659 47.8 MAASSSSSLPVYGVGEESTPQMRPPSNSSTKKKRNQPGTPSKYYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKDPKRKVYLCPEPTCVHHHPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPPSIGRHLYGAQDHPNIISQSAPGHFTHLLPSSMGSSFRPMSASGFFLTEQNNQSSFHEDQPNQSQQGFFGNKGFHGVMQFPDMQSHTNNCASNVFNLGFIPNSTTDGTTNLNNNNDTNTISTNLNQFSAANNGNNEAAASNIFAVIGDQMNSAALPSLYSNASAVGGGGGSGIGGLFPHMSATALLQKAAQLGSTTSGSNTTSTLLRSFGSSSNSGGKVSDRTLFPLGYGGVTFGEHESNLQDMMNSFGSGSSGSGMFGSGMNSFGGLECSSSRTNMETLEDPKLQQDVRGVRMGGTDRLTRDFLGVGQIVRSMSGGGGGYSQKQGAEGMVLEGNERNSAPSSQGFGGGNGNYQ 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5233890 5235765 - CmoCh04G010480.1 Cmo04g01048 380023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01048 552 Pfam Zinc-finger double-stranded RNA-binding 63 85 IPR022755 -
Cmo04g01048 552 MobiDBLite consensus disorder prediction 1 37 - -
Cmo04g01048 552 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Cmo04g01048 552 Gene3D Classic Zinc Finger 45 111 - -
Cmo04g01048 552 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 19 515 - -
Cmo04g01048 552 MobiDBLite consensus disorder prediction 1 45 - -
Cmo04g01048 552 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Cmo04g01048 552 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 515 - -
Cmo04g01048 552 MobiDBLite consensus disorder prediction 513 552 - -
Cmo04g01048 552 SMART c2h2final6 139 159 IPR013087 -
Cmo04g01048 552 SMART c2h2final6 104 134 IPR013087 -
Cmo04g01048 552 SMART c2h2final6 63 85 IPR013087 -
Cmo04g01048 552 Gene3D Classic Zinc Finger 113 196 - -
Cmo04g01048 552 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Cmo04g01048 552 MobiDBLite consensus disorder prediction 534 552 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01048 Cmo-Chr4:5233890 Cmo18g00662 Cmo-Chr18:8407004 0 dispersed
Cmo04g01048 Cmo-Chr4:5233890 Cmo14g00196 Cmo-Chr14:889620 3.19E-104 transposed
Cmo04g01048 Cmo-Chr4:5233890 Cmo08g00317 Cmo-Chr8:1974557 1.44E-104 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9589 PF12171 zf-C2H2_jaz 3.40E-05 CL0361 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01048 K25870 - csv:116401647 726.857