Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01049 ATGGCGGACGACTGCACCGACACCTCCGTTGCCACCTCTTCCACTCCACCCAACTGGTGGGATACCCACAATCACCACCACCATCATTATAACTCCAGCTCCTCTTGCGACGACGACGTTTCAATCTCCACCTCCTCCTTCACCAACGCTTCCAATCACTCCGCTCTCACCCTCGATTCCTCCTCCGCCGCCGCCGCCGCCGCCCACCTTCTTCCCCACCACGCTTCCGATCATCATCTCTGGACCCAAGTTTTATTGAACATTGGAAACGGCGTGGAAGACATACAACCAAATTTCCTGGAACCCATTGCATGTAGCGATTACCTTAAAAAAATGGACACAAACACCAACTGGGACGACACTTTTCAAACCTTCAACAACAATAACGGACTTCTCACAACCCTAGAAAACGAGCGGTTGTTGAAGCTTTCAAATCTCGTCAACACTTGGTCCATAGCCCTGCCCAGCCCTGACGCCCATCTCCGCCATCTCATGGACCAGGAACCCCACCCTCTCCGACCCACCACCCTCCTCGACCCAGACGCCGCCCTCGACCCATGTGCCTCCGCCTTCTTTAGGCGCTCGCTTCATAATCCGATGCCCGCCAAGCCCTTCTATGATAACCACACCGCCACTACCCGTAATTATGGTGATTATATCTCCTTTAATCCACGATTTGCTAAGCCACTGCTCGGTGTTAATCCTTCCATTAAGTCCTTGAATTTGTCAGCTCAAAGTAAGAAGCAGATTCAACAAATTTCTTCGCCAACAAGAGGTAGTGGGCGAGGAAGTGGAGTTTTGAACGAAGGGAAGAAGAAAAGATCTGAAGAATCTTCTGAAACTGTCACCAAAAAGGCTAAACAAGATAACTCAGCAACACCTGCTTCTACTAAGATTCAGCAACCAAAGGTCAAAATTGGGGATAGAATCACGACCCTTCAACAAATTGTGTCACCATTTGGAAAGACTGATACCGCGTCGGTTCTAAACGAAACCATTGGATACATTAAATTCCTACAAGAACAAGTTCAGCTGCTGACGAATCCTTACATGAAGGCGAATTCGTATAAGGATGCATGGCAAAGCTTGGAGAGGAAGGAATCAAAAGGGGAAGGGAAAATGGAGCTAAGGAGCAGAGGGCTGTGTTTAGTTCCAATTTCATGCACGCCACAAGTGTATAGAGAGAACAGTGGATCTGACTATTGGACGCCTTACAGAGGATGTTTCTATAGATAG 1236 48.54 MADDCTDTSVATSSTPPNWWDTHNHHHHHYNSSSSCDDDVSISTSSFTNASNHSALTLDSSSAAAAAAHLLPHHASDHHLWTQVLLNIGNGVEDIQPNFLEPIACSDYLKKMDTNTNWDDTFQTFNNNNGLLTTLENERLLKLSNLVNTWSIALPSPDAHLRHLMDQEPHPLRPTTLLDPDAALDPCASAFFRRSLHNPMPAKPFYDNHTATTRNYGDYISFNPRFAKPLLGVNPSIKSLNLSAQSKKQIQQISSPTRGSGRGSGVLNEGKKKRSEESSETVTKKAKQDNSATPASTKIQQPKVKIGDRITTLQQIVSPFGKTDTASVLNETIGYIKFLQEQVQLLTNPYMKANSYKDAWQSLERKESKGEGKMELRSRGLCLVPISCTPQVYRENSGSDYWTPYRGCFYR 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5241270 5243458 - CmoCh04G010490.1 Cmo04g01049 380024

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01049 411 MobiDBLite consensus disorder prediction 248 303 - -
Cmo04g01049 411 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 305 356 IPR036638 GO:0046983
Cmo04g01049 411 MobiDBLite consensus disorder prediction 1 20 - -
Cmo04g01049 411 MobiDBLite consensus disorder prediction 285 300 - -
Cmo04g01049 411 MobiDBLite consensus disorder prediction 267 284 - -
Cmo04g01049 411 CDD bHLH_AtbHLH_like 300 346 IPR045239 -
Cmo04g01049 411 Gene3D - 300 367 IPR036638 GO:0046983
Cmo04g01049 411 MobiDBLite consensus disorder prediction 248 262 - -
Cmo04g01049 411 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 290 339 IPR011598 GO:0046983
Cmo04g01049 411 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 19 398 - -
Cmo04g01049 411 MobiDBLite consensus disorder prediction 1 23 - -
Cmo04g01049 411 PANTHER TRANSCRIPTION FACTOR BHLH111 19 398 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01049 - - - cmos:111447729 782.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01049 Cmo-Chr4:5241270 Cmo03g00529 Cmo-Chr3:5415334 1.48E-29 dispersed
Cmo16g00923 Cmo-Chr16:5660098 Cmo04g01049 Cmo-Chr4:5241270 3.58E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1105 . . . . . . . . Cmo04g01049 . Cma04g00972 . Car04g00914 . . . . . . . . . . . . . . . . . . . . . . . . Chy10g00019 Cme10g01341 . . . . Bpe11g01724 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00946 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012297 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 3 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01049 Cmo_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0