Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01052 ATGGTAGGAGGAGGGCCTCAAGTTCTTGAACAGCCACAACAATCTCTGCCTCAACCCCTATCTACTGCAGAAGAGGAGGCTGTTAAGAGGAATACCGATTGTGTTTACTTTCTTGCTTCGCCTTTGACGTGTAAAAAGGGAAGTGAATGTGAGTATCGCCATAGTGAATATGCCCGGGTCAATCCTAGGGATTGCTGGTTCTGGTTGAACGGTAACTGCTTGAATCCAAAGTGTTCATTCCGACATCCACCTCTTGATGGCTTGGTAGGAACTCCTCATTCAACAACTCCGAGTTCTCAAATTCCTTCCCAAACTTCAGCCATTCCATCCGCCCCTGTGAACTCAAGTAAACAAGCTGTCTCCTGCATTTTTTTTCAGAAGGGTCTATGTTTGAAAGGGGATCGATGTGCGTTCTTGCATGGGCCGTCCCCTGTTCCAACGAACAAAGTCCCTCTGATGGCAACAAATGGCCAAGCTAGTGAACCACCAAGTGTGAAGAAAATTGCTGGGGGTACCCAGAGGAGCAATCAAGAACAGAAGAATCCTCAAGAAATTTTTTTGAAGTCAGTTGGTGATGCATCTGTTAAGCTTGCAATGAAAGATGGAAGTGTGCCGTCAAAGATCGGAAACATCAATGAGAAGAGCAGACCACCTGCAAAAGTGGCTGATGGTGGTTCAAGGTATAAGGCTACAAAATCTCTTCCAATTTTAAATGAGAGTTCATTAAGTAGGGGTAATCGTCTGCAACAGAGTCATGTAATTGATGATCATGGGTTACAGAATGGTAAGGATGCTGATGAGTTTTTGAAGGAGTCCTCTCCAGGTTTTGATGTTCTTGTTGATGATGAGCTGAGAGGCTCTGGTTATTATGGCAGTGAAGAACAATATGGGAGAACAAGAGGTCATGATGGAGCAAATATGATTTCTATGAATGATTATGACATCAGTCATTCTGCTGATTATAAGATGATGGCTAATGTTGATCATGATGTTTATAATGATGTAACTGACTATGATTATGACACTAGGAAGGGGCAGTATGGTTGGGACCAGCGTTGGACCTCGTCTGAGAAGCTGTCTTTGGGGTCTGCCCAGATGGAAAGGAGGCTCTCCCGAAAATCTATCAGTCCTGAACATGTTCAGAATGTGGATTTACGTCATCGTTTAAACAAGCAGAGAAGGGGAAATGGTTTAAGATCTGTAATCAATAATGAAAATGTTGGTAATCGCCCTGAAGAACGAAACTATCATGCTTCTAGGAGAGATTCTCACCCCTCTCAAGAAAGCTCCATGAGTAACCGTCTCCGAGGTAGAATAAAGCTCCCAAGGATACCATCACCAGTTAGAAGTAGTAATGTGGGGCCAGAAAGAGATTTCAACCGGGGAAGATCCGGGGGAAGATTGTCACCAGGAAGGTCACTTTCCTTGTCTTATCAGGAAAGCAGTAGAGATGAAATGAAAGGCAGGCTGGAAGTAGATTATAACAATGAGCGTAGAAATTTCAATGGTCTTAATTCTGGGAGGGATGGAATGGATGGAACATCTGACTTTGCTGCTCCAAAACGTCTGGCCGAGCTGAAAGGCGAAAAACACGTGGTTAGCAAGGAGAAGCAAACCCTTGGCAAAAGAAAAGGCTTCGATAACGATCAACCTGGAGTTGAACTGTCGTTTGAGGGACCAAAGTCTCTCAGTGAGATTCTTAGAAAGAAGAGACAAGTTAAATCAGCTGTTGATCTTCCTATGAATAATGCCGAAAGAGAAAGCAGTGAAAGATTAAAAGAACGCTCCATTATTCCCTCCGTGGAGCAAGGTGGTCGGTCATCAACGAGCAAGCAAAAAGCAAATAGCCTTGAAGGAATCGTGTTCGCTCCAGTTGAAACTTTTGGGAAAGAAGAGGAAAACATCAATGTAACTCATCACAATTCTTCTCAGCCTATCCATTCAACCGACGATCACGGGATTGAAGCTTATGAAGAAACCTTCGAGGACCCCGAGTACGAGGGAGATGATCTGAGAGACGGTGAATACGAGTACGAGGAAGTCGATGACAGAGAATACAATTATGAAGAAGGTGACAACGTAGTTCCTGAGGAAGAGTATATGGACGATGAAGACGGAGATGACTTTGCCAAGAAGATCGGCGTTATGTCATGA 2154 43.92 MVGGGPQVLEQPQQSLPQPLSTAEEEAVKRNTDCVYFLASPLTCKKGSECEYRHSEYARVNPRDCWFWLNGNCLNPKCSFRHPPLDGLVGTPHSTTPSSQIPSQTSAIPSAPVNSSKQAVSCIFFQKGLCLKGDRCAFLHGPSPVPTNKVPLMATNGQASEPPSVKKIAGGTQRSNQEQKNPQEIFLKSVGDASVKLAMKDGSVPSKIGNINEKSRPPAKVADGGSRYKATKSLPILNESSLSRGNRLQQSHVIDDHGLQNGKDADEFLKESSPGFDVLVDDELRGSGYYGSEEQYGRTRGHDGANMISMNDYDISHSADYKMMANVDHDVYNDVTDYDYDTRKGQYGWDQRWTSSEKLSLGSAQMERRLSRKSISPEHVQNVDLRHRLNKQRRGNGLRSVINNENVGNRPEERNYHASRRDSHPSQESSMSNRLRGRIKLPRIPSPVRSSNVGPERDFNRGRSGGRLSPGRSLSLSYQESSRDEMKGRLEVDYNNERRNFNGLNSGRDGMDGTSDFAAPKRLAELKGEKHVVSKEKQTLGKRKGFDNDQPGVELSFEGPKSLSEILRKKRQVKSAVDLPMNNAERESSERLKERSIIPSVEQGGRSSTSKQKANSLEGIVFAPVETFGKEEENINVTHHNSSQPIHSTDDHGIEAYEETFEDPEYEGDDLRDGEYEYEEVDDREYNYEEGDNVVPEEEYMDDEDGDDFAKKIGVMS 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5262162 5266097 - CmoCh04G010520.1 Cmo04g01052 380027

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01052 717 MobiDBLite consensus disorder prediction 389 488 - -
Cmo04g01052 717 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 13 717 - -
Cmo04g01052 717 ProSiteProfiles Zinc finger C3H1-type profile. 29 57 IPR000571 GO:0046872
Cmo04g01052 717 Pfam Zinc-finger containing family 29 84 IPR041686 -
Cmo04g01052 717 MobiDBLite consensus disorder prediction 578 615 - -
Cmo04g01052 717 MobiDBLite consensus disorder prediction 530 549 - -
Cmo04g01052 717 MobiDBLite consensus disorder prediction 410 424 - -
Cmo04g01052 717 ProSiteProfiles Zinc finger C3H1-type profile. 116 143 IPR000571 GO:0046872
Cmo04g01052 717 MobiDBLite consensus disorder prediction 601 615 - -
Cmo04g01052 717 MobiDBLite consensus disorder prediction 91 110 - -
Cmo04g01052 717 Gene3D - 20 85 - -
Cmo04g01052 717 MobiDBLite consensus disorder prediction 530 557 - -
Cmo04g01052 717 ProSiteProfiles Zinc finger C3H1-type profile. 59 85 IPR000571 GO:0046872
Cmo04g01052 717 Pfam RNA-binding, Nab2-type zinc finger 122 141 - -
Cmo04g01052 717 Gene3D - 112 178 - -
Cmo04g01052 717 MobiDBLite consensus disorder prediction 206 226 - -
Cmo04g01052 717 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 13 717 - -
Cmo04g01052 717 MobiDBLite consensus disorder prediction 1 21 - -
Cmo04g01052 717 SUPERFAMILY CCCH zinc finger 117 141 IPR036855 GO:0046872
Cmo04g01052 717 SMART c3hfinal6 61 84 IPR000571 GO:0046872
Cmo04g01052 717 SMART c3hfinal6 116 142 IPR000571 GO:0046872
Cmo04g01052 717 SMART c3hfinal6 29 56 IPR000571 GO:0046872
Cmo04g01052 717 MobiDBLite consensus disorder prediction 155 182 - -
Cmo04g01052 717 MobiDBLite consensus disorder prediction 89 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01052 - - - csv:101212711 1079.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00006 Cmo-Chr4:25164 Cmo04g01052 Cmo-Chr4:5262162 0 dispersed
Cmo04g01052 Cmo-Chr4:5262162 Cmo11g00569 Cmo-Chr11:2746768 1.06E-31 dispersed
Cmo04g01052 Cmo-Chr4:5262162 Cmo10g00604 Cmo-Chr10:2736905 2.08E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1079 . . . . . . . . Cmo04g01052 . Cma04g00976 . Car04g00917 . . . . Bhi07g00087 . . . . . . . . . . . . . . . . . . . . Cme10g01362 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00958 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012053 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9590 PF15663 zf-CCCH_3 1.50E-11 CL0537 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01052 Cmo_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.327903 0.0 0.0 0.0 0.0