Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01053 ATGGAGATTAGCAGCGTCGGCATGGATAATTCGGCGGTGACGGCGTTTTTGTTGACCGACGCAACCACTTGGTGGCAAGAAATAAACGATTCTCCCCTTTGGCAGGATCGTATCTTCTTAATCCTTGCTGCTCTCTATGGCGTCGTCGCCATCGTCGCTCTTATTCAACTAGTCCGTATACAGTTGAGGGTGCCGGAGTATGGTTGGACCACGCAGAAGGTCTTCCATTTTCTCAATTTCTTGGTGAACGGAGCGCGAGCGGTCGTTTTTGTATTCCGTCGTGACGCTCAGAATTTGGAACCGCTGATTCTCCGACATATCTTGCTTGACATGCCAAGCCTTGCCTTCTTCACAACTTATGCTCTATTGGTTTTGTTTTGGGCAGAGATTTACTACCAGGCACGTGCTGTATCGACTGACGGGTTGAGACCAACTTTCTTTACAGTAAATGCAGTTGTCTATGTAATTCAGATTGTTTTGTGGCTGATATTGTGGTGGAATCCTGTTCATGTACTGGCCATCCTTTCTAAGATGTTCTTTGCCAGTGTCTCTTTGTTCGCTGCCCTTGGCTTTCTTATTTATGGGGGAAGATTGTTCTTGATGTTACAGCGCTTCCCTGTGGAATCCAAAGGAAGACGGAAGAAGTTGCAAGAGGTCGGCTATGTGACGACTATATGTTTTTCATGTTTCCTAATCAGATGCATCATGATGTGTTTTAATGCTTTTGATCAAGCTGCTGACCTCGACGTTTTGGATCATCCGGTTCTAAATTTTATATACTACATGTTGGTTGAGATTTTACCTTCTTCTCTGGTCCTCTTCATTCTGAGAAAGCTGCCCCCGAAACGAGGAATCACGCAGTACCATCCTATCCGTTAA 879 45.28 MEISSVGMDNSAVTAFLLTDATTWWQEINDSPLWQDRIFLILAALYGVVAIVALIQLVRIQLRVPEYGWTTQKVFHFLNFLVNGARAVVFVFRRDAQNLEPLILRHILLDMPSLAFFTTYALLVLFWAEIYYQARAVSTDGLRPTFFTVNAVVYVIQIVLWLILWWNPVHVLAILSKMFFASVSLFAALGFLIYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFSCFLIRCIMMCFNAFDQAADLDVLDHPVLNFIYYMLVEILPSSLVLFILRKLPPKRGITQYHPIR 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5268105 5278525 - CmoCh04G010530.1 Cmo04g01053 380028

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01053 292 PANTHER TOBAMOVIRUS MULTIPLICATION PROTEIN 3 9 292 - -
Cmo04g01053 292 Pfam THH1/TOM1/TOM3 domain 21 292 IPR009457 -
Cmo04g01053 292 PANTHER TOBAMOVIRUS MULTIPLICATION PROTEIN 1-LIKE ISOFORM X1 9 292 IPR040226 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01053 - - - csv:101221380 546.584
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00005 Cmo-Chr4:17554 Cmo04g01053 Cmo-Chr4:5268105 0 dispersed
Cmo04g01053 Cmo-Chr4:5268105 Cmo19g00273 Cmo-Chr19:1991682 4.77E-110 dispersed
Cmo04g01053 Cmo-Chr4:5268105 Cmo13g00759 Cmo-Chr13:7374861 1.30E-119 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1077 . . Bda01g02198 . . . Bma14g01624 . Cmo04g01053 . . . Car04g00918 . . . . Bhi07g00090 . . . . . . . . . . . . . Cone13ag0666 . . . . . . Cme10g01366 . . . . Bpe11g01617 . Bma01g00029 . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00964 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007319 0 1 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 3 1 1 1 1 0 0 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01053 Cmo_Chr04 FPKM 11.311131 12.239009 12.08563 13.652111 12.147214 9.473845 14.85001 21.480574 19.824703 22.326391