Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01063 ATGACCAAGGAGCCCTCAACGTGCACGAGAATGGAAGCATTATTTCTTCCCAATCGCCATGGCTGCATCTCATGCTCTCAGCTGAGAAACAAAGACGCAAACCCACACGCAGGAAAATTTTGCGACGGAATGGGGACGTTCATCAAACTTGAGGATTCTCCTATGTTCCTGAAACAGATATTTTCTCTAGAACAACCAACTGATGAGTTGGAAGAACGATGCAGAAGACTACACGATGGATGTAGGATATTTATGGAAACTCTTGGAGAAGCTTGTAATGGAGACATTTCTTTTGCAGATTCTTTGGAAGGATTCGGTGTTGGACAGGATGATCCTGTCAGCGTGTCCATTGGAGGTCCAGTTATATCCAAATTTATCACTGCATTTCGTGAACTGGCTACCTACAAAGAACAACTGCGTTCCCAGGTAGAACATGTATTATCGGATCGGTTGATGCAGTTCCTGAACGAAGATTTACAAGGAGTAAGGGGAGGCAGATCCTTGCCCAGGCACTTGGGGCCAATAAGATCATAG 534 44.94 MTKEPSTCTRMEALFLPNRHGCISCSQLRNKDANPHAGKFCDGMGTFIKLEDSPMFLKQIFSLEQPTDELEERCRRLHDGCRIFMETLGEACNGDISFADSLEGFGVGQDDPVSVSIGGPVISKFITAFRELATYKEQLRSQVEHVLSDRLMQFLNEDLQGVRGGRSLPRHLGPIRS 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5319477 5329883 + CmoCh04G010630.1 Cmo04g01063 380038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01063 177 Gene3D Arfaptin homology (AH) domain/BAR domain 49 167 IPR027267 -
Cmo04g01063 177 PANTHER CENTAURIN/ARF 44 166 IPR045258 GO:0005096
Cmo04g01063 177 Pfam BAR domain of APPL family 50 163 - -
Cmo04g01063 177 SUPERFAMILY BAR/IMD domain-like 50 164 IPR027267 -
Cmo04g01063 177 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 44 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01063 K12489 ACAP; Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein - csv:101221303 212.231
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01063 Cmo-Chr4:5319477 Cmo06g01704 Cmo-Chr6:11735281 4.75E-40 dispersed
Cmo04g01063 Cmo-Chr4:5319477 Cmo14g01435 Cmo-Chr14:11684312 1.30E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1058 . . . . . . . . Cmo04g01063 . . . Car04g00926 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01197 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015773 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 1 1 0 0 1 0 0 0 2 0 1 0 0 0 0 9
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01063 Cmo_Chr04 FPKM 12.170768 11.396287 12.281283 12.001311 8.602802 9.787498 8.364271 21.674143 19.963982 17.995808