Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01064 ATGTGGGATGTGAGGCTTTTTAAAGCGATGGAGGTGTTGAAGGGGGTCTTTTCGATTTCAGTGGTAGTAGAGTTCCAAGACTTGAAAGGTGAGGTGGGTCTCAAGGTGTGTATGGGCCTCCTGAAGGGAGGAAGGCGTTTAGGGAGGAGATTGGTAATCTCTGGGTCTTTGTGGAGAAAGTTGCTGTTTAGCGGGAGACTTGATTTAACCAGATTCTCGTTTGAAAAGTTTGGTGGAGGAAGGATTGCCAAGTCGATGAAGTGTTTTAATAGACTCATAGAAAAGTGTGACCTTGTAGACCCCCTTGGTGAACAACAGGTTTACTTGGTCTACGGAAGAGAGAGTGAGCTTACAGATTTACTTGGTCTAACAGAAGAAAAAGAGTGGTGCATAGCAGGATTTCAAAGTAGTACATACAATAGTTTGACAAGTAAGGGGGAAAAAGAGAATGAAATGATTTTCAAACATCAGCACAATCACTTTTGGGACCTCCTGAATTCAAAGTCAGCATTCGAGAAAAGCCGCTTCAATCTAGTGAATGCTCTCATGAACGTTGAAGCAAAGAAGAAGTATGAGTTCTTAGAATCTATAAGTGCACTGATGGATGCTCATTTGAGATATTTTAAGCTAGGCCATGACTTATTGGGCCAGATGGAACCTTTCATTCATCAGGTTCTAACATATACACAACAATCTAAAGAACTGGCCAACAATGAACAAGATAAACTTGCAAAAAGAATTCAGGAATTCAGGTCACAAGCAGAGCTGGACAATTTGCAAGATTCCAATAGCCTAGATCTTTCCGTGATTTCTGATAGCATTCTTGGTAGTGGTACTAGTTCCTACAGAAATGTTGAAACAGCTTCCATGTTCATTGTCAATGGGCAGGTTGAAACTATAAAACAAGGATATCTCTTGAAACGATCTTCAGGTTCGAGGGGAGAATGGAAAAGGATGTTTTTCGTACTTGATAGTCAAGGTTCTCTCTATTATTATAAGAACAAGGGAAACAAATATATGGGCCATCAATCTCTTAGTTTCAATCGTTCAAATGAACACCACAAAAGTGTTTTTGATAGATTCCGTTCAAGGCACAAGAGGGCATCATCATTCAATGAAGAAATTTTGCGTTGCTCTACAGTTAATCTGCATACGTCTACAATAAAGAAGGATGCAGAGGATACAGACCTACGACTTTGCTTCAGAATAATTTCTCCCTCCAAGACCTACACTTTGCAGGCCGAAAACGAGGCAGATAGGCTGGACTGGATCAATAAAATCACGGGGGCTATTGCATCTCTTTTCAATTCTTACTTTCTTCAACAGCCATTTCTGGAAGCAAAACATGATGAAAGTTACAACAACAATTTCGACGATTATAACGTACAGACACTACATCAAAACAGACTAGAAGATGGCAGTCAAGTAGGTTCTGTTTCTAAGATATTAAGAGAAATTCCTGGAAATGATCTATGTGCAGAATGCGGCACTCCAGAGCCTAAGTGGGCCTCTCTAAACCTTGGCATTTTGTTGTGCATAGAATGCTCTGGTGTTCATCGTAATCTTGGTGTCCATATTTCGAAGGTAAGATCGATAGTATTAGATGTCAAAGTCTGGGAGCCTTCAATACTGGACTTGTTTAGGAACTTGGGCAATGCTTATTGTAACTCTATTTGGGAAGGATTGTTTCTTGCAGATACGGGAAGCGATAATATACAACACGACGTAGCCACGCCAATTCCGAAACCAAGTCTCAAGGATCCCATACAGCGTCGGGAGAAATATGTTCATGCCAAGTATGTAGAGAAACTGTTTGTGGTCAAGGATAGTGAAGCACCCGGCAACAATTCTTATGCAAAAAGTATCTGGGAAGCTGTCAAAACAAATGACTTGCGAGAAGCTTATCGCCTCATAGCAGTTTCAGCAGTATCGATTGTCAACTCAACTTTTGATGATGTGGTCAGTGTCAGTTCGAGCCCGAATTTGGATGAGGAGCCCTCGGGAAGTAATCAAGAATCTCATAATCCATCGTTGTGTGGGAGAGATTTGGATTCTAGCGAGTCAAAGAACAGTCTTCAAGGTTGCTCACTATTGCATCTCGCTTGTCAAAATGACAATCAAGTGATGCTTGAACTGTTATTGCAATTCGGTGCCAATATAAATGTATGCGACTCTAATGGAAGTACGCCTTTGCACCAATGCATCTCCCAGAAAAACAATACCTTGGCTAAGTTTCTACTTAGAAGAGGTGCACGACCATCCATCAAAGACGGTGGAGGATTAAGTGCATTAGAAAGAGCAATGGAAATGGGAGCAATAGCCGATGAGGAGCTATTTCTTCTGCTTACAAGATCTGAATAA 2361 41.04 MWDVRLFKAMEVLKGVFSISVVVEFQDLKGEVGLKVCMGLLKGGRRLGRRLVISGSLWRKLLFSGRLDLTRFSFEKFGGGRIAKSMKCFNRLIEKCDLVDPLGEQQVYLVYGRESELTDLLGLTEEKEWCIAGFQSSTYNSLTSKGEKENEMIFKHQHNHFWDLLNSKSAFEKSRFNLVNALMNVEAKKKYEFLESISALMDAHLRYFKLGHDLLGQMEPFIHQVLTYTQQSKELANNEQDKLAKRIQEFRSQAELDNLQDSNSLDLSVISDSILGSGTSSYRNVETASMFIVNGQVETIKQGYLLKRSSGSRGEWKRMFFVLDSQGSLYYYKNKGNKYMGHQSLSFNRSNEHHKSVFDRFRSRHKRASSFNEEILRCSTVNLHTSTIKKDAEDTDLRLCFRIISPSKTYTLQAENEADRLDWINKITGAIASLFNSYFLQQPFLEAKHDESYNNNFDDYNVQTLHQNRLEDGSQVGSVSKILREIPGNDLCAECGTPEPKWASLNLGILLCIECSGVHRNLGVHISKVRSIVLDVKVWEPSILDLFRNLGNAYCNSIWEGLFLADTGSDNIQHDVATPIPKPSLKDPIQRREKYVHAKYVEKLFVVKDSEAPGNNSYAKSIWEAVKTNDLREAYRLIAVSAVSIVNSTFDDVVSVSSSPNLDEEPSGSNQESHNPSLCGRDLDSSESKNSLQGCSLLHLACQNDNQVMLELLLQFGANINVCDSNGSTPLHQCISQKNNTLAKFLLRRGARPSIKDGGGLSALERAMEMGAIADEELFLLLTRSE 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5332228 5341933 + CmoCh04G010640.1 Cmo04g01064 380039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01064 786 Pfam Ankyrin repeats (3 copies) 684 757 IPR002110 GO:0005515
Cmo04g01064 786 SUPERFAMILY PH domain-like 298 446 - -
Cmo04g01064 786 Pfam BAR domain of APPL family 162 237 - -
Cmo04g01064 786 Pfam Putative GTPase activating protein for Arf 480 607 IPR001164 GO:0005096
Cmo04g01064 786 Coils Coil 233 253 - -
Cmo04g01064 786 ProSiteProfiles Ankyrin repeat profile. 693 725 IPR002110 GO:0005515
Cmo04g01064 786 CDD PH_ACAP 301 436 - -
Cmo04g01064 786 SUPERFAMILY BAR/IMD domain-like 159 321 IPR027267 -
Cmo04g01064 786 SUPERFAMILY Ankyrin repeat 692 773 IPR036770 -
Cmo04g01064 786 SMART PH_update 299 434 IPR001849 -
Cmo04g01064 786 ProSiteProfiles Ankyrin repeat profile. 726 758 IPR002110 GO:0005515
Cmo04g01064 786 Gene3D Arf GTPase activating protein 457 613 IPR038508 -
Cmo04g01064 786 Gene3D - 667 783 IPR036770 -
Cmo04g01064 786 PRINTS HIV Rev interacting protein signature 508 525 IPR001164 GO:0005096
Cmo04g01064 786 PRINTS HIV Rev interacting protein signature 531 552 IPR001164 GO:0005096
Cmo04g01064 786 PRINTS HIV Rev interacting protein signature 489 508 IPR001164 GO:0005096
Cmo04g01064 786 MobiDBLite consensus disorder prediction 656 685 - -
Cmo04g01064 786 ProSiteProfiles PH domain profile. 298 432 IPR001849 -
Cmo04g01064 786 Gene3D Arfaptin homology (AH) domain/BAR domain 135 256 IPR027267 -
Cmo04g01064 786 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 163 782 - -
Cmo04g01064 786 ProSiteProfiles Ankyrin repeat region circular profile. 693 724 - -
Cmo04g01064 786 Gene3D - 292 441 IPR011993 -
Cmo04g01064 786 SMART arf_gap_3 477 613 IPR001164 GO:0005096
Cmo04g01064 786 SMART ANK_2a 693 722 IPR002110 GO:0005515
Cmo04g01064 786 SMART ANK_2a 726 755 IPR002110 GO:0005515
Cmo04g01064 786 CDD ArfGap 481 600 - -
Cmo04g01064 786 SUPERFAMILY ArfGap/RecO-like zinc finger 480 607 IPR037278 -
Cmo04g01064 786 ProSiteProfiles ARF GTPase-activating proteins domain profile. 477 613 IPR001164 GO:0005096
Cmo04g01064 786 PANTHER CENTAURIN/ARF 163 782 IPR045258 GO:0005096
Cmo04g01064 786 ProSiteProfiles Ankyrin repeat region circular profile. 726 757 - -
Cmo04g01064 786 Pfam PH domain 300 431 IPR001849 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01064 K12489 ACAP; Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein - csv:101221303 1030.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00031 Cmo-Chr4:180819 Cmo04g01064 Cmo-Chr4:5332228 0 dispersed
Cmo04g01064 Cmo-Chr4:5332228 Cmo14g01435 Cmo-Chr14:11684312 2.02E-169 dispersed
Cmo04g01064 Cmo-Chr4:5332228 Cmo06g01704 Cmo-Chr6:11735281 3.67E-172 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1009 . . . . . . . . Cmo04g01064 . . . Car04g00928 . . Cpe09g00246 . Bhi07g01433 . . . . . . . . . . . . . . . . . . . . . . . Bda07g01508 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003009 1 11 0 0 1 2 2 2 3 0 1 1 2 1 1 2 2 2 3 3 1 1 1 2 2 1 0 2 0 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01064 Cmo_Chr04 FPKM 5.271283 6.359542 5.19371 6.142724 11.812046 11.357427 11.933734 7.33496 6.521722 7.185076