Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01071 ATGGAGTCTCTTCCTTCCGGTTACCGCCCCAACGTTGGCGTTTGTCTCATCAATTCTGATAGTCAGGTTTTTGTGGCTTCTAGACTGAATGTTCCAGGAGCGTGGCAGATGCCTCAGGGAGGCATTGAGGATGGTGAAGACCTCAAATTGGCAGCTGTTAGGGAACTGAAAAAGGAAACTGGAGTAGTGTCTGCTGAGATCGTCGCCGAGGTACCCAAATGGTTGACTTACGACTTTCCTTCCGCTGTGAAGACGAAAGTCAATCGTCTCTGGGGCGGACAATGGCATGGACAGGCACAAAAATGGTTTCTTATGAGAATGACGAAAGACGACAGCGAGATTAACTTGGACAATGATGAAGCCGACGTAGAATTTGCAGAGTGGAAATGGGCAAGCCCCGAAGAGGTTATCGAACAGGCTGTGGACTACAAGAGACCCACATATGAGGAAGTAATGAAGACTTTTGCAGCATACCTCGATGGAAACAAGATATCTACCAAATGTAAATCATCAAAGTGGTCTCTCCAGAGGAATAATCAATCAACACACGCCTCCGTGGACCCTCACAAGAATATGGTTGAGAAGGAATTTTTCACTGAATATGGTGAAGCTACTCAATATGAAATTCAAGAACTTATAGGTAGAGGGAGCTATGGAGTTGTTGCATCTGCCATAGACACTCATTCTGGTGAGAAAGTTGCTATCAAGAAGATAAATAATGTCTTCGAGCATGTTTCTGATGCCACACGTATTCTAAGAGAAATAAAGCTGCTCCGATTTCTCCGACATCCCGATATCGTTGATATAAAACATATATTGCTCCCTCCATGTAGAAGGGAGTTTAAAGATTTGTACATTGTTTTTGAATTGATGGAGTGTGATCTTCATCATGTACTCAAGACTAATGATGATCTTACCCCTCAGCATCATCAGTTTTTCTTGTATCAACTTCTTAGAGCCTTGAAGTATATACATTCAGCGCATGTGTTCCATAGAGATTTGAAGCCGAAGAATATACTTGCTAATGCTGACTGCAAACTGAAGATTTGTGACTTTGGACTTGCGCGTGCATCTTTTAGTGATGCCCCATCTGCCATTTTTTGGACTGATTATGTGGCTACTCGATGGTACCGTGCTCCTGAACTCTGTGGTTCTTTTCTCTCAAAGATTCGTAACGAAAAGTCTAAAAGGTATTTGAGTGGCATGAGAAAAAAACATCCAATTCCTCTGTCAAGAAAGTTCCCCAATGCAGATCCACTAGCTCTTCGTTTACTCGAACGTCTGCTCGCATTTGATCCCGATGATCGTCCTTCAGCAGAGGAGGCATTAGCTGATCCATACTTCCATGGACTGGCAAATCTGGAGGATGAACCATCCAGGCAACCCATTTCAAAATTCGAGTTCGAGTTTGAAAGGGGAAAGTTGACACAAGATGATGTCAGAGAGCTTATTTATAGAGAAATTTTAGAGTATCACCCTCAAATGTTACAGGGCTACCTTCAAGGTTCTGGGAGTCACTTCTTGTATCCCAGTGGAATTGATCGATTCAAGCGTCAATTTGATAATCTTGAGGAACGTTCTGGTAAAGTTGAGAGAGGCACAGGCAGTCCACTTCTAAGGAAGCATGCCTCCTTGCCTAGGGAGCGAATATATACACCACGAGATGAAGACGATGATGAAAAATGTATATCGGAACGGAGAACTGCAGTGCTTCGAAGCCCTCCTGGACCTGCTTGTTCATTAACTGCTCAGAATGGTTCTGTTCATGTAGATTGCAATAGCTATAACCTGTTGAGGAATGCAAGTATAATTCTAGCCACTTCATCTCCGCCATTTTTTCCGGCGGAAGCTCTTCCCACCAAATCAGGCTATCTTCCAATCAACCCCTCCACCGGCTCCGCCATTTACTTCGCCTTTTACGAAGCCCAAACCCCAATTTCTTCCATCTCAAAAACCCCTCTTCTGATTTGGCTCCAAGGCGGCCCTGGCTGTTCTTCCATGATCGGCAACTTCTTCGAGCTGGGTCCATGGCGGGTCAATTTCCACAAAAAAGAAACCGACCCTGTTTCCCTAATCCCCAATACAGGCTCGTGGAATCGAAGATTTGGGGTTCTATTTCTCGACAATCCAATCGGAACTGGCTTCAGTATTGCAGCAACTAAAGATGAGATCCCTAAAAACCAATACTCTGTTTCTAAGCATCTTTTTTCTGCAATTTCTTCGTTTATCGAGCAGGATATTACGTTTAAGAATCGACCCATTTACATAACAGGGGAGAGCTATGCAGGGAAATATGTTCCCTCAATTGGGTATTACATTTTGAAGAAAAACCACAAATTACCTGTTGATAAGAGGCTCAATTTAGCTGGTGTAGCCATTGGAAATGGGCTAACAGATCCCATTACTCAAGTAGCCACTCATGCGTTGAATGCTTACTATTCTGGGCTGATTAACGAAAGGCAAAAAAAGGAAATGGAAATCGCTCAATTGGAGGCTGTGGAGCTCACTAGAAAGGGGAATTGGAGTGAGGCCACAAATGCAAGGAGTAAGGTCTTGAATTTGCTCAAGAACATGACAGGATTAGCCACTCTGTATGATTATACAAGAAAATCTCCTTATAATTCTGAATTGGTAGCTGAGTTCTTGAGCTTCAAGGAGGTGAAGAGGGCACTGGGAGTGAATGAGTCCATGGTTTTCGAAGAGTGTAGCGATCTTGTTGGGGAGGTTTTGAAAGATGATGTGATGAAGAGTATGAGATATAAGGTTGATTATCTGGTGAAGAACAGTAAGGTATTGGTTTATCAAGGGCAGTTTGATTTGAGGGACGGCGTGGTTTCAACGGAGGCTTGGTTGAAGAAGGTGAAATGGGGTGAGATTGAGAGGTTTTTGGGAGCTGACAGAAAGATTTGGCGTGTTGGAGATGAGTTAGCTGGTTATGTTCAGACATGGAAGAGTTTGAGCAATGCTGTCGTGTTGGGAGCTGGTCATCTTGTTCCTTCTGATCAAGCTTTGAACTCTCAAGCAATGATTGAAGATTGGGTGTTGGAGAAGGGAGTGTTTGGTGATGATAACGCAGAAGAGAAGAGGCCTTTTGGTGCTAATGATTTTGGGGTTTGGTGA 3120 43.59 MESLPSGYRPNVGVCLINSDSQVFVASRLNVPGAWQMPQGGIEDGEDLKLAAVRELKKETGVVSAEIVAEVPKWLTYDFPSAVKTKVNRLWGGQWHGQAQKWFLMRMTKDDSEINLDNDEADVEFAEWKWASPEEVIEQAVDYKRPTYEEVMKTFAAYLDGNKISTKCKSSKWSLQRNNQSTHASVDPHKNMVEKEFFTEYGEATQYEIQELIGRGSYGVVASAIDTHSGEKVAIKKINNVFEHVSDATRILREIKLLRFLRHPDIVDIKHILLPPCRREFKDLYIVFELMECDLHHVLKTNDDLTPQHHQFFLYQLLRALKYIHSAHVFHRDLKPKNILANADCKLKICDFGLARASFSDAPSAIFWTDYVATRWYRAPELCGSFLSKIRNEKSKRYLSGMRKKHPIPLSRKFPNADPLALRLLERLLAFDPDDRPSAEEALADPYFHGLANLEDEPSRQPISKFEFEFERGKLTQDDVRELIYREILEYHPQMLQGYLQGSGSHFLYPSGIDRFKRQFDNLEERSGKVERGTGSPLLRKHASLPRERIYTPRDEDDDEKCISERRTAVLRSPPGPACSLTAQNGSVHVDCNSYNLLRNASIILATSSPPFFPAEALPTKSGYLPINPSTGSAIYFAFYEAQTPISSISKTPLLIWLQGGPGCSSMIGNFFELGPWRVNFHKKETDPVSLIPNTGSWNRRFGVLFLDNPIGTGFSIAATKDEIPKNQYSVSKHLFSAISSFIEQDITFKNRPIYITGESYAGKYVPSIGYYILKKNHKLPVDKRLNLAGVAIGNGLTDPITQVATHALNAYYSGLINERQKKEMEIAQLEAVELTRKGNWSEATNARSKVLNLLKNMTGLATLYDYTRKSPYNSELVAEFLSFKEVKRALGVNESMVFEECSDLVGEVLKDDVMKSMRYKVDYLVKNSKVLVYQGQFDLRDGVVSTEAWLKKVKWGEIERFLGADRKIWRVGDELAGYVQTWKSLSNAVVLGAGHLVPSDQALNSQAMIEDWVLEKGVFGDDNAEEKRPFGANDFGVW 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5368638 5378171 + CmoCh04G010710.1 Cmo04g01071 380046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01071 1039 ProSiteProfiles Protein kinase domain profile. 207 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01071 1039 SUPERFAMILY alpha/beta-Hydrolases 612 1014 IPR029058 -
Cmo04g01071 1039 Pfam NUDIX domain 8 149 IPR000086 -
Cmo04g01071 1039 ProSitePatterns MAP kinase signature. 242 345 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cmo04g01071 1039 Gene3D Transferase(Phosphotransferase) domain 1 386 471 - -
Cmo04g01071 1039 Coils Coil 813 838 - -
Cmo04g01071 1039 SMART serkin_6 207 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01071 1039 PRINTS Carboxypeptidase C serine protease (S10) family signature 986 999 IPR001563 GO:0004185|GO:0006508
Cmo04g01071 1039 PRINTS Carboxypeptidase C serine protease (S10) family signature 707 717 IPR001563 GO:0004185|GO:0006508
Cmo04g01071 1039 PRINTS Carboxypeptidase C serine protease (S10) family signature 742 767 IPR001563 GO:0004185|GO:0006508
Cmo04g01071 1039 PRINTS Carboxypeptidase C serine protease (S10) family signature 694 706 IPR001563 GO:0004185|GO:0006508
Cmo04g01071 1039 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 172 389 - -
Cmo04g01071 1039 SUPERFAMILY Nudix 7 158 IPR015797 -
Cmo04g01071 1039 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 388 592 - -
Cmo04g01071 1039 Gene3D Phosphorylase Kinase; domain 1 472 494 - -
Cmo04g01071 1039 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 172 389 - -
Cmo04g01071 1039 ProSitePatterns Protein kinases ATP-binding region signature. 213 237 IPR017441 GO:0005524
Cmo04g01071 1039 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 1 159 - -
Cmo04g01071 1039 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 388 592 - -
Cmo04g01071 1039 CDD Ap4A_hydrolase_plant_like 7 155 IPR022927 -
Cmo04g01071 1039 SUPERFAMILY Protein kinase-like (PK-like) 204 453 IPR011009 -
Cmo04g01071 1039 ProSitePatterns Serine carboxypeptidases, serine active site. 756 763 IPR018202 GO:0004185
Cmo04g01071 1039 Pfam Serine carboxypeptidase 619 1014 IPR001563 GO:0004185|GO:0006508
Cmo04g01071 1039 Hamap RNA pyrophosphohydrolase [rppH]. 2 160 IPR022927 -
Cmo04g01071 1039 Pfam Protein kinase domain 207 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01071 1039 Gene3D Phosphorylase Kinase; domain 1 206 290 - -
Cmo04g01071 1039 Gene3D alpha/beta hydrolase 608 1026 IPR029058 -
Cmo04g01071 1039 ProSitePatterns Serine carboxypeptidases, histidine active site. 986 1003 IPR033124 GO:0004185
Cmo04g01071 1039 Gene3D Transferase(Phosphotransferase) domain 1 291 385 - -
Cmo04g01071 1039 ProSiteProfiles Nudix hydrolase domain profile. 7 153 IPR000086 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01071 Cmo04g02672 CCT
Cmo04g01071 Cmo04g02672 ECH
Cmo04g02672 Cmo04g01071 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00544 Cmo-Chr1:2694278 Cmo04g01071 Cmo-Chr4:5368638 1.81E-49 dispersed
Cmo04g01071 Cmo-Chr4:5368638 Cmo11g00311 Cmo-Chr11:1499676 0 dispersed
Cmo13g00241 Cmo-Chr13:1946712 Cmo04g01071 Cmo-Chr4:5368638 1.05E-46 dispersed
Cmo14g00353 Cmo-Chr14:1596149 Cmo04g01071 Cmo-Chr4:5368638 2.74E-10 transposed
Cmo18g00957 Cmo-Chr18:10663741 Cmo04g01071 Cmo-Chr4:5368638 1.18E-63 transposed
Cmo04g00039 Cmo-Chr4:237448 Cmo04g01071 Cmo-Chr4:5368638 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74264 PF00450 Peptidase_S10 1.60E-98 CL0028 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01071 K09645 - csv:101205133 743.421