Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01072 ATGTTGATATCGATATCTTCTCGTGTTCTTGTCTGTGTTCTTTTGTTCGTCATAGGCTGCGTCGGTGCTGTTGAAATCGATGAGGAAAAGAAACATTTCATTGTTTTCCTGGAAATGAAGCCTGATTTGAATGAATTTGATGCAGTGGAAACACATCTTAATGTTCTCATGTCAGTGAAGGAAAGCTATGTCGAGGCGGAGGAGTCGATGGTGTATAGTTACACAAAAAGCTTCAATGCCTTTGCAGCCAAGCTTACTGAAGATGAAGCCCTAGCATTGTCAAAGCGGGAAGACGTGCATCACGTGATTCCAAACCGATATAGAAAACTACAAACAACACGATCATGGGATTTCATCGAATTGCCTTCCAAAGCCAGGAGAAATTCCAAAGAGACGGATATTATTGTGGGTTTATTTGATACTGGGATCACTCCAACCGCTGATAGCTTTAAAGATGATGGGTTTGGTCCTCCTCCCAAAAAATGGAAGGGCACGTGTCACCATTTCGCCAATTTCACCGGCTGCAACCAAAAACTCATCGGAGCAAGATATTTCAAGCTCGACGGCAACCCAGATCCGGCTGACATCTTGTCGCCGATAGACGTCGATGGCCACGGCACGCATACGTCCTCAACGGCAACAGGTAATGCAGTTGCCGGAGCCAGCCTCTCTGGTCTGGCCAAAGGAACTGCCCGTGGAGGCGTGCCGTCCGCCAGAGTTGCCATGTACAAGGTCTGCTGGGCTAGCACTGGGTGCGCTGATATGGATATTCTAGCCGCCTTTGACGCTGCCATACATGATGGCGTCGATGTCATTTCAATATCAATCGGCGGCGGCGCCTTTGGCAATTACTCCGATGACTCCATCTCCATTGGGGCGTTTCATGCCTTGAAGAAGGGTATCATCACCGTGACCTCCGCCGGAAACGACGGCCCGACTCCCGGCAGTGTCGTTAACCACGCGCCGTGGATTGTGACGGTTGGTGCTAGCGCGATTGATCGGAAATTTATCAGTCTACTAGAGTTGGGCAATGGGAAGAACATCTCGGGAGTAGGGATAAACACATTCAATCCAAAGAAAAAAATGTACCCATTAGTGTACGGAGGGGATGTGGCGAGGGGCGCGGAGAACAGAGAGAGCGCAAGCCATTGCGCGGAGGACTCGCTTGATCCAAGCAAGGTGAAGGGCAGCCTTGTGTTCTGCGAATTGATCACTTGGGGCGTTGATTCTGTTGTCAATGCGCTTGGTGCCAACGGCGCTATCATTCAAAGCGATGAGTATCTTGACAATGCTAATATCTTCATGGCTCCTGCCACCATGGTTAGCAGCTCTGTTGGTGCTGTTATTCACTCCTATATCAAGTCCACCAGAACCCCCACGGCAGTAATATACAAAACCAGGCAGCTCAAAGCAGCAGCTCCTATGGCCGCTTCCTTCTCTTCTAGAGGCCCAAATCCAGGCACCACTCGCATTCTTAAGCCGGACATAGCAGCGCCCGGAGTGGACATATTGGCCGGTTACACGCCGCTGAAGTCACTAACAGGACAGGAGGGTGACACCCAATTCTCCAAATTTACACTCATGTCTGGCACATCCATGGCCTGCCCCCACGTCGCCGCCGCTGCCGCCTATGTCAAGTCTTTCCATCCTCTTTGGTCTCCTGGCGCCATTAGATCCGCCCTGATCACCACCGCGAGTCGGATCAGCCGACAGCTGAATCCTGATGGCGAATTTGCATATGGCGCTGGCAATCTAAATCCATCAAGAGCCATAAATCCTGGCCTAATCTATGATCTTAATGAAATGTCATACATCCAATTCCTTTGTAGCGAAGGCTACACCGGATCTTCAATAGGCGTCCTCGCCGGAACTAAATCCATAAACTGCTCTACTTTAATTCCGGGGCATGGACATGACTCTCTCAATTATCCAACCTTTCAACTCAGGCTCAAGAGCCCCCAACGAGCAATGTCCACCGTGTTCCGACGACGAGTCACCAACGTCGGTCACCCTGTATCTGTCTACAATGCCACCATCAAGGCTCCCCCCGGGGTGGAGATCACGGTTACACCGAGCACATTGTCATTTTCACAGCTGCAGCAGAAGCGGAGCTTTAAGGTGGCTGTGAAGGCCGGTCCTTTGGCGTCGGGGAAAATGGTGTCGGGTTCGGTTGCTTGGATCGGAGCTCGACATGCTGTGAGAAGTCCAATTGTTGTTTATAGCCCTGAGGATGAAGAAGTATTTGTGAGGGATTGA 2256 50.53 MLISISSRVLVCVLLFVIGCVGAVEIDEEKKHFIVFLEMKPDLNEFDAVETHLNVLMSVKESYVEAEESMVYSYTKSFNAFAAKLTEDEALALSKREDVHHVIPNRYRKLQTTRSWDFIELPSKARRNSKETDIIVGLFDTGITPTADSFKDDGFGPPPKKWKGTCHHFANFTGCNQKLIGARYFKLDGNPDPADILSPIDVDGHGTHTSSTATGNAVAGASLSGLAKGTARGGVPSARVAMYKVCWASTGCADMDILAAFDAAIHDGVDVISISIGGGAFGNYSDDSISIGAFHALKKGIITVTSAGNDGPTPGSVVNHAPWIVTVGASAIDRKFISLLELGNGKNISGVGINTFNPKKKMYPLVYGGDVARGAENRESASHCAEDSLDPSKVKGSLVFCELITWGVDSVVNALGANGAIIQSDEYLDNANIFMAPATMVSSSVGAVIHSYIKSTRTPTAVIYKTRQLKAAAPMAASFSSRGPNPGTTRILKPDIAAPGVDILAGYTPLKSLTGQEGDTQFSKFTLMSGTSMACPHVAAAAAYVKSFHPLWSPGAIRSALITTASRISRQLNPDGEFAYGAGNLNPSRAINPGLIYDLNEMSYIQFLCSEGYTGSSIGVLAGTKSINCSTLIPGHGHDSLNYPTFQLRLKSPQRAMSTVFRRRVTNVGHPVSVYNATIKAPPGVEITVTPSTLSFSQLQQKRSFKVAVKAGPLASGKMVSGSVAWIGARHAVRSPIVVYSPEDEEVFVRD 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5379682 5384868 + CmoCh04G010720.1 Cmo04g01072 380047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01072 751 CDD Peptidases_S8_3 109 566 IPR034197 -
Cmo04g01072 751 Pfam Fibronectin type-III domain 641 739 IPR041469 -
Cmo04g01072 751 Pfam Peptidase inhibitor I9 47 110 IPR010259 -
Cmo04g01072 751 SUPERFAMILY Subtilisin-like 110 595 IPR036852 GO:0004252|GO:0006508
Cmo04g01072 751 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 33 741 IPR045051 -
Cmo04g01072 751 Gene3D - 333 469 - -
Cmo04g01072 751 ProSiteProfiles Serine proteases, subtilase domain profile. 115 591 - -
Cmo04g01072 751 PANTHER SUBTILISIN-LIKE PROTEASE SBT4.14 33 741 - -
Cmo04g01072 751 CDD PA_subtilisin_like 340 463 - -
Cmo04g01072 751 Gene3D - 608 741 - -
Cmo04g01072 751 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 22 111 IPR037045 -
Cmo04g01072 751 PRINTS Subtilisin serine protease family (S8) signature 131 150 IPR015500 -
Cmo04g01072 751 PRINTS Subtilisin serine protease family (S8) signature 201 214 IPR015500 -
Cmo04g01072 751 PRINTS Subtilisin serine protease family (S8) signature 529 545 IPR015500 -
Cmo04g01072 751 ProSitePatterns Serine proteases, subtilase family, serine active site. 530 540 IPR023828 -
Cmo04g01072 751 Gene3D Peptidase S8/S53 domain 133 604 IPR036852 GO:0004252|GO:0006508
Cmo04g01072 751 Pfam Subtilase family 133 583 IPR000209 GO:0006508|GO:0008236
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01072 Cmo-Chr4:5379682 Cmo04g01223 Cmo-Chr4:6205237 0 dispersed
Cmo04g00042 Cmo-Chr4:245545 Cmo04g01072 Cmo-Chr4:5379682 5.05E-28 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01072 - - csv:101206801 1216.83