Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01075 ATGGCCGGGATTTTCGCCGGCGGTAGCGACTGTCCACCGGCTTCGGCTTTACTGGATTTTGTTCGCGATGTCGTTCGAATGTCGGCGGGGACGGGCAGTGGAGGGGTTTTCAAGAAGGATTGTACCGATCTGGTGCGTCGGATCGTGCTTTTGACGCATTTGTTTGAGGAGATCAGAGACTTTAATGGCGTCAAATTTCGACATGTTGGTGCATCTTCTTCTTCTTCTTCTTGTGGCGCTGTTACCGTGAGGGATTCGTCTCCGTCTTCGTGGCTATGTGATTTAGTGGCGGCGTTGAAGGATACTGAGCGTCTCATTTTTGCCGCTTCGACTTTCCGGTCCTGCGGTTCTTCTTCTGAAGAAGTTGCCAATAAGATAATCTTTCAATTCCAATGCGTGACATGGAAGTTAGAGAAGGCATTGAGCAATCTTCCTTATGATCGCCTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTGAGAGCTCAGTTGAGAAGAGCAGCTGAAAAATATGGGTCTCTGACTGCAATTCCGCCATCAGTTGTTCAATCTCAGTTGCTGAAGAAAAATGTGGACCTGTTAAACCTGAACAACTGTGTTGATAACTTTCATGTTGAGGAGAATGGTATCGTTGATCATGAGATTACAGTGAAATTTGATGCCTTTCCAAATTGTAGAGGGTTGATGAATAGGGGTGTGGATCAGATTGAGAAACTTCCATCCTCCTCAGAGGGTTGTTCTGATGGACAGAATGACTCTGCCAAAAAGAGTGGAGACCAGGTGAAGAACCCAGACGCGGTTCCAATCCCTGATGATTTTTTATGCCCCATATCCCTGGAAATCATGAGGGATCCTGTTATTGTGTCCACAGGCCAGGCTTTCGACTTCCATGAATTACTTGATGTTTCTTTTGATGAGTTCGGTGATTTGAAGCTCTCACCTGTTCTGCTTTTTCTTACAACACAGACGTATGAGAGATCTTATGTACAGAGGTGGATAGATTGTGGGAATACTACTTGTCCCAAAACTCAGCAGAAGCTCCAGAATTTGATTCTCACCCCAAATTATGTGCTGCGAAGTCTTATTAGTCAATGGTGTGTTAACCACAATATTGAGCAACCTACAGGACTAACCAATGGGAAGATCAAAAAGTGTGATGGGTCGTACCGTGATGTGTGCGAGGAGATGGCAGCCATTGAAACTCTGGTCCGCAAACTAACTAGCCATTCAATTGAGGAGCAGAGAGCATCTGTGACCGAACTTCGATCTCTATCGAAAAGAAGCACGGATAATAGAATACTGATTGCCGAAGCAGGAGCAATTCCTGCTTTGGTCAATCTATTAACTGTTGGTGATGTTTTAATACAAGAAAATGCAGTTACTTCCATTCTGAACCTTTCAATATATGAGAACAACAAGGGACTCATTATGCTTGCTGGTGCCATACCTTCGATTGTCCAAGTTCTGAGAGTTGGAAGTATGGAAGCGAGAGAAAATGCCGCAGCAACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGATTCTGGGGCCATCCCGGCTCTTGTGAATTTACTTGAAAATGGAAGCTCAAGAGGGAAGAAGGATGCTGCAACAGCACTATTTAATTTGTGTATTTATCAGGGTAACAAGGGAAGGTCTGTGAGGGCAGGGATCATTCCAGCTCTATTAAAGATGCTTACGAACTCGGTTAACTCCATGGTCGACGAAGCTCTCACAATAATGTCGGTCCTGGCCAGCCATCAAGAAGCAAAAGTAGCCATGGTGAAAGCCAGTACCATACCTGTCCTAATAGACCTGCTGAGGACCGGATTGCCTCGCAACAAAGAAAACGCTGCTGCAATTTTGCTTGCTTTGTGTAAGAGAGATACAGAAAATCTTTCCTGCATGAGTAGGCTGGGTGCCGTGATTCCACTGACAGAGCTCGCCAAGAGTGGCACAGAGAGAGCAAAGAGGAAGGCTATTTCTCTGTTGGAGCATCTTCGAACGCTGCAGCAGCAGCAGCAGCAGATATAG 2055 45.16 MAGIFAGGSDCPPASALLDFVRDVVRMSAGTGSGGVFKKDCTDLVRRIVLLTHLFEEIRDFNGVKFRHVGASSSSSSCGAVTVRDSSPSSWLCDLVAALKDTERLIFAASTFRSCGSSSEEVANKIIFQFQCVTWKLEKALSNLPYDRLDISEEVQEQVELVRAQLRRAAEKYGSLTAIPPSVVQSQLLKKNVDLLNLNNCVDNFHVEENGIVDHEITVKFDAFPNCRGLMNRGVDQIEKLPSSSEGCSDGQNDSAKKSGDQVKNPDAVPIPDDFLCPISLEIMRDPVIVSTGQAFDFHELLDVSFDEFGDLKLSPVLLFLTTQTYERSYVQRWIDCGNTTCPKTQQKLQNLILTPNYVLRSLISQWCVNHNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSHSIEEQRASVTELRSLSKRSTDNRILIAEAGAIPALVNLLTVGDVLIQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGDSGAIPALVNLLENGSSRGKKDAATALFNLCIYQGNKGRSVRAGIIPALLKMLTNSVNSMVDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTENLSCMSRLGAVIPLTELAKSGTERAKRKAISLLEHLRTLQQQQQQI 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5408500 5411669 + CmoCh04G010750.1 Cmo04g01075 380050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01075 684 SMART arm_5 512 552 IPR000225 GO:0005515
Cmo04g01075 684 SMART arm_5 553 593 IPR000225 GO:0005515
Cmo04g01075 684 SMART arm_5 594 634 IPR000225 GO:0005515
Cmo04g01075 684 SMART arm_5 430 470 IPR000225 GO:0005515
Cmo04g01075 684 SMART arm_5 471 511 IPR000225 GO:0005515
Cmo04g01075 684 SMART arm_5 636 676 IPR000225 GO:0005515
Cmo04g01075 684 CDD RING-Ubox_PUB 275 347 IPR045210 -
Cmo04g01075 684 MobiDBLite consensus disorder prediction 241 267 - -
Cmo04g01075 684 SUPERFAMILY ARM repeat 391 674 IPR016024 -
Cmo04g01075 684 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 482 524 IPR000225 GO:0005515
Cmo04g01075 684 MobiDBLite consensus disorder prediction 241 259 - -
Cmo04g01075 684 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 20 297 - -
Cmo04g01075 684 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 315 676 - -
Cmo04g01075 684 Pfam U-box domain 271 297 IPR003613 GO:0004842|GO:0016567
Cmo04g01075 684 Pfam U-box domain 315 372 IPR003613 GO:0004842|GO:0016567
Cmo04g01075 684 Gene3D - 383 475 IPR011989 -
Cmo04g01075 684 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 441 483 IPR000225 GO:0005515
Cmo04g01075 684 SUPERFAMILY RING/U-box 312 374 - -
Cmo04g01075 684 Pfam Armadillo/beta-catenin-like repeat 513 551 IPR000225 GO:0005515
Cmo04g01075 684 Pfam Armadillo/beta-catenin-like repeat 431 469 IPR000225 GO:0005515
Cmo04g01075 684 SMART Ubox_2 274 367 IPR003613 GO:0004842|GO:0016567
Cmo04g01075 684 Coils Coil 152 172 - -
Cmo04g01075 684 PANTHER U BOX DOMAIN-CONTAINING 20 297 - -
Cmo04g01075 684 PANTHER U BOX DOMAIN-CONTAINING 315 676 - -
Cmo04g01075 684 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 564 606 IPR000225 GO:0005515
Cmo04g01075 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 305 IPR013083 -
Cmo04g01075 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 309 375 IPR013083 -
Cmo04g01075 684 SUPERFAMILY RING/U-box 266 297 - -
Cmo04g01075 684 ProSiteProfiles U-box domain profile. 270 374 IPR003613 GO:0004842|GO:0016567
Cmo04g01075 684 Gene3D - 476 580 IPR011989 -
Cmo04g01075 684 Gene3D - 581 684 IPR011989 -
Cmo04g01075 684 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 523 550 IPR000225 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01075 Cmo15g00984 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01075 Cmo-Chr4:5408500 Cmo15g00984 Cmo-Chr15:5248499 0 dispersed
Cmo13g00931 Cmo-Chr13:8185126 Cmo04g01075 Cmo-Chr4:5408500 2.03E-35 dispersed
Cmo15g00326 Cmo-Chr15:1512571 Cmo04g01075 Cmo-Chr4:5408500 2.74E-36 dispersed
Cmo04g00047 Cmo-Chr4:273414 Cmo04g01075 Cmo-Chr4:5408500 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01075 - - csv:101221534 1083.55