Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01083 ATGGCTGGAGATATCGAACAGCCGTTTACCTTTAATTTTCAGGTTGAATCTGTAATCTCGGACTCTATATCATTTGGAAGGTTTGAAAAAGAATCCTTATCTTGGGAAAGGAGGTCATCATTCTCTCATAATCGTTACCTAGAAGAGGTAGAGAAATTCTCCAAACCGGGTTCTGTCAATGAGAAAAAGGCTTACTTTGAGGCTCATTTCAAGAAAAAGGGAGGGTTGCTTGGTCAGAATTCAGCAGAGTCCCATACTATTGACAGTGATGTATCAGAGCAAGTGAATCAAGAGGCAGACATTGAGATTATAAACATGGAGAATCACGATGGCCATTTTGATGATAGCTCTGTCAGTTCACAAAACCATGGGGACCATGTGGTGATGGAATTTGAAGAAATGCCAAGACATGGAATTTCATCTCCTAATCCTAAATGTGAAAATTCTTTCAGCGGTGTTGATGGTTCAACATATGGTGATTGCAATGGCGTTCATGCTGAAATAAATGAGCAAGATGACAGTGGGGAGAACACGTTCTCAACGGTTGTAAGTGGTGAACCAGAGGTTGAAATAAAGGAAGATGCCAACAGTCTTGGAATGAGCGAGAATACGCCGTCTGAAGCCATGGAGGCACTCCCCAAAATTGAGCTAGTGAAGAAAGGTGCCAAAAGCTGCTCAGGAAGTCAGCGAACTCTCACTCCGAAGATGATAACGAGAAGGGAAACAAAGGCCTCCTCCAGATCTCAGGCTAACATTTGTCAGAGTCGAAGAAATGTTTCGGGTGATGTTCTCAAATCTCCTGAAAAGGCATCCGGTAAAAGCAAAGGAGAGCCTTCACATACAACTTGCACAGAAGCTCATCCATCAAAATCTGCCATTTCACGTACAAAAGCTGTCCGTAGAACCCCCAAAGTTGAGGATTCTAAAGTTATCAAGGGAAGAACCATTCTTGAGAGTAGAAGGCAAAATCGGACTGTCAACTCCGACACTGGGAAAAGCGCTTCAGCTTCCAACTTTAGAAGCAAAGACTTCGCAGAAAGGAGAAAACAGGCAAGCGTGATCTCTGGTAAGGCAGACTCTGAAATTAAGAAATTACAGAAGAACCTTGACATCAGATCAAAACCAATACCCTCTTCTTATGGTGCAATTCGACCAGAGTCAGATGGGAAGAAGGTTGTTAACTTGACAGTCAATATTGAATTGGTTTTCTTATGGATTGCCTGTAGTTACCTGTGTCCTGGTGCTGTGTTTAGTGGCACGAAAGCAAGAAACACTTTAAGAAAGTCCACAGCTGTGGCGTCCTCCTCGCATTCGCAGTTAGGAAAAGACATCGATTCCTCTGCAAGTGAAGCACCAAATAATACTTCAAAGAACAGGAACTGCCATGTAGCCATGCATGATGAAGCAAGTGTTAATTCTTCAAGTCCATCAGCTAACCAAGAGTTAAGGAAAGACCAAGCAAAGGGGAAAGAACCCAATGTGCAGAAATCCATAGTTTCAGAGAATTATAAGACGATGTCCAAACAAGGAATTGAGGGGAGGCAGAAAGTCGGGGTGCGGAGAAGCATGAACTTGATGGGGAGACCAAGGGACACTAAGGCTGTTTCTGGCTCCGGAATGGGACGATTTGCTGTTGGTGTTACATCATGA 1650 43.33 MAGDIEQPFTFNFQVESVISDSISFGRFEKESLSWERRSSFSHNRYLEEVEKFSKPGSVNEKKAYFEAHFKKKGGLLGQNSAESHTIDSDVSEQVNQEADIEIINMENHDGHFDDSSVSSQNHGDHVVMEFEEMPRHGISSPNPKCENSFSGVDGSTYGDCNGVHAEINEQDDSGENTFSTVVSGEPEVEIKEDANSLGMSENTPSEAMEALPKIELVKKGAKSCSGSQRTLTPKMITRRETKASSRSQANICQSRRNVSGDVLKSPEKASGKSKGEPSHTTCTEAHPSKSAISRTKAVRRTPKVEDSKVIKGRTILESRRQNRTVNSDTGKSASASNFRSKDFAERRKQASVISGKADSEIKKLQKNLDIRSKPIPSSYGAIRPESDGKKVVNLTVNIELVFLWIACSYLCPGAVFSGTKARNTLRKSTAVASSSHSQLGKDIDSSASEAPNNTSKNRNCHVAMHDEASVNSSSPSANQELRKDQAKGKEPNVQKSIVSENYKTMSKQGIEGRQKVGVRRSMNLMGRPRDTKAVSGSGMGRFAVGVTS 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5449204 5455059 - CmoCh04G010830.1 Cmo04g01083 380058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01083 549 MobiDBLite consensus disorder prediction 320 340 - -
Cmo04g01083 549 MobiDBLite consensus disorder prediction 432 496 - -
Cmo04g01083 549 PANTHER PROTEIN WVD2-LIKE 7 22 549 - -
Cmo04g01083 549 MobiDBLite consensus disorder prediction 432 460 - -
Cmo04g01083 549 PANTHER TPX2 (TARGETING PROTEIN FOR XKLP2) PROTEIN FAMILY-RELATED 22 549 IPR044216 -
Cmo04g01083 549 MobiDBLite consensus disorder prediction 299 319 - -
Cmo04g01083 549 MobiDBLite consensus disorder prediction 243 261 - -
Cmo04g01083 549 MobiDBLite consensus disorder prediction 276 291 - -
Cmo04g01083 549 MobiDBLite consensus disorder prediction 467 482 - -
Cmo04g01083 549 MobiDBLite consensus disorder prediction 224 347 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01083 - - - csv:101208552 671.003
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01083 Cmo-Chr4:5449204 Cmo15g00388 Cmo-Chr15:1781186 1.03E-19 dispersed
Cmo04g00053 Cmo-Chr4:301175 Cmo04g01083 Cmo-Chr4:5449204 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g418 . . . . . . . . Cmo04g01083 . Cma04g01004 . Car04g00941 Car04g00058 . . . . . . . . . . Cla07g00588 Cam07g0614 Cec07g0681 Cco07g0662 Clacu07g0623 Cmu07g0648 Cre07g0994 Cone13ag0767 Cone19ag0770 . . Lsi04g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01034 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009363 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01083 Cmo_Chr04 FPKM 12.149522 11.885326 23.344257 22.590897 5.094427 5.611026 3.762975 5.14585 5.030974 5.136029