Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01090 ATGACGAAGTCCAAGAGTATGTTACACAACCTCATGAGACCATTCAGATTCGGTTCATCAAGAGATAACCAGGGCGAGGACGATTTGGAGCAGATTGCAGCTAATGAACAGAAGTTTTTTCGGTTCGAAACCTTAGTTGAAGCTACCAACAATTTTCACCCCACGAACAAGCTTGGCCAAGGCGGATTTGGTCCAGTTTTCAAGGGGAAGTTAAAGGATGGAAGAGTGATTGCAGTTAAGAAGTTGTCACAATATTCAAAACAAGGAAAAAAAGAGTTTATGACTGAGGCCAAATTGTTGGCTCGTGTGCAGCACAGAAATGTTGTCAATTTGTTGGGTTACTGTGTGCATGGTTCAGAAAAATTACTGGTTTACGAATACGTCACGAATGAGAGCCTCGACAAGCTTCTCTTTAAAGCCAACAGACGAGGAGAACTTGATTGGAAGATGAGGTATGGCATAATCTTTGGCGTAGCACGAGGGTTGCAATATCTTCATGTAGACTCACATAATGTCATTATCCATCGTGACATTAAGGCCGGTAACGTTTTGTTGGATGATAAATGGGTCCCTAAGATTGCGGATTTCGGTATGGCTCGTCTCTTCCCGGAAGATCAAACTCATGTCAATACTCGTGTTTCTGGTACAAACGGGTATATGGCTCCCGAATATGTAATGCACGGGCATCTATCTGCGAAGGCAGATGTATTTAGCTTTGGTGTTTTAGTGTTGGAGCTTATCAGTGGCCAGCGAAACTCGTTATCATCTGGTTTATTTATGGACGCCGAAAATTTACTAGAGTGGGCTTACAAGCTTTACAAGAAAGGCAGGAGCTTGGAGATCATGGACCCAACTTTAGCATCATCAGCTGATCCTGACCAAGTTACAATGTGCACTCAGATAGGATTGCTTTGCACACAAGGCGATCCGCACCTACGGCCGACCATGCCACATGTAGTTTTGACCCTGTCGAGGAGACCTGGTACTTTGGAGGAACCAACAAGACCGGGAATGCCTGGTTCTCGATATAGAAGAACACGTAGGACAAGCGTATCGTCCTCCAATGCTGGAACTTCTGGTGCATCAGATTCCTATGCTTCGACGACCAATACTACTGGAACTATTACTGCAACGGCAACTGCAACTGCAAATGAGATTGCTTCTGGTTCTTCTTCAGTTAGTCAAGGATACGTTACTCGTGGGAAAACTATTACCGCAACCGAAAACGAAATTGCTTCTGGTTCTTCTTCAGTTAGTCAAGGATACGATACTCGTGGGAAACGTCCCATGGAAGGAATGGCTTGCTTCTCCTGCATTTCTGTGACAAAAAATGTGGCTATCGCTTCACTCAATCCCAGCGACGACTCTCACTCCCCTCCTCCCAAAACCAATGGCGCCGCCAAAACTATTCCGATCACCAATCCACGGTTACGCCGGCGGCTTCCAAAACCTCGTCGGCCCTCCGTTATTGAAATCGAACGTGCTATCGGTGCCGGAAGGGATTTGGAAGAAGATAGGAAGGCTGCATTTGACATGTTTTTGATGAGTTTTACGGGGAAATATGAAGGGGCACTCATGAAGAAGCTTCGCGAGACAGGGGAATGGGTAACTGATCAGACTGAAACCAAATTTCAAGCTTCAGGAAAATCGTTTCTGCTGTTTACGTTTCAATGGGTTCTTCCAATTTGGGCATTCTCACTCCTTGTGGCTTCTGGGGTCATTAAGTTACCATTCAACACTCCATTTCTTGATCAACTTCTTACGTAA 1767 45.1 MTKSKSMLHNLMRPFRFGSSRDNQGEDDLEQIAANEQKFFRFETLVEATNNFHPTNKLGQGGFGPVFKGKLKDGRVIAVKKLSQYSKQGKKEFMTEAKLLARVQHRNVVNLLGYCVHGSEKLLVYEYVTNESLDKLLFKANRRGELDWKMRYGIIFGVARGLQYLHVDSHNVIIHRDIKAGNVLLDDKWVPKIADFGMARLFPEDQTHVNTRVSGTNGYMAPEYVMHGHLSAKADVFSFGVLVLELISGQRNSLSSGLFMDAENLLEWAYKLYKKGRSLEIMDPTLASSADPDQVTMCTQIGLLCTQGDPHLRPTMPHVVLTLSRRPGTLEEPTRPGMPGSRYRRTRRTSVSSSNAGTSGASDSYASTTNTTGTITATATATANEIASGSSSVSQGYVTRGKTITATENEIASGSSSVSQGYDTRGKRPMEGMACFSCISVTKNVAIASLNPSDDSHSPPPKTNGAAKTIPITNPRLRRRLPKPRRPSVIEIERAIGAGRDLEEDRKAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLLT 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5510873 5515233 - CmoCh04G010900.1 Cmo04g01090 380065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01090 588 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 373 - -
Cmo04g01090 588 SMART serkin_6 52 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01090 588 Pfam Protein tyrosine and serine/threonine kinase 55 321 IPR001245 GO:0004672|GO:0006468
Cmo04g01090 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Cmo04g01090 588 MobiDBLite consensus disorder prediction 324 369 - -
Cmo04g01090 588 SUPERFAMILY Protein kinase-like (PK-like) 37 336 IPR011009 -
Cmo04g01090 588 MobiDBLite consensus disorder prediction 450 469 - -
Cmo04g01090 588 CDD STKc_IRAK 58 325 - -
Cmo04g01090 588 PANTHER RECEPTOR-LIKE KINASE 3 373 - -
Cmo04g01090 588 ProSiteProfiles Protein kinase domain profile. 52 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01090 588 Gene3D Transferase(Phosphotransferase) domain 1 128 331 - -
Cmo04g01090 588 MobiDBLite consensus disorder prediction 345 369 - -
Cmo04g01090 588 Gene3D Phosphorylase Kinase; domain 1 18 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01090 Cmo-Chr4:5510873 Cmo09g00901 Cmo-Chr9:4698818 1.00E-99 dispersed
Cmo04g00059 Cmo-Chr4:326522 Cmo04g01090 Cmo-Chr4:5510873 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74265 PF07714 PK_Tyr_Ser-Thr 4.50E-48 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01090 - - cmax:111486649 808.905