Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01091 ATGAATATGGCTACGCTTCAGACATGGAGGAAAGCTTATGGCGCTCTCAAGGATTCTACCAAAGTCGGCCTTGCCCATGTCAATAGCGATTATGCGGATTTGGATGTGGCAATAGTCAAAGCTACTAACCACGTCGAGTGCCCGCCGAAAGAGAGACACCTCAGGAAAATTTTGGTTGCTACATCGGCAATCAGGCCCCGTGCTGATGTTGCTTATTGCATTCATGCCCTTGCCCGACGATTGTCCAAGACGCAGGAGCGACTCGAATGTTTCAGGATACTGAAGTATGACATTGAATCTGAACGCCTGCCAAGACCTGCCCAAGGTCAGGATAAGGGCTACAGCAGAACCAGGGAACTGGACAGTGAAGAACTGTTGGAACATTTGCCTGCTTTGCAACAGCTGTTGTATCGTCTTATTGGCTGCAAGCCGGAAGGAGCAGCTATTGGGAATTATGTTATACAGTATGCCTTGGCACTGGTATTGAAAGAGAGCTTTAAAATCTATTGTGCTATTAATGATGGAATTATAAATCTTGTTGACAAGTTTTTTGAGATGCCAAGGCACGAGGCTATCAAAGCCCTTGATATCTATAAAAGAGCTGGCCAACAGGCAGGAAGCCTATCAGATTTCTATGATATTTGCAAAGGGTTAGAACTTGCTCGGAATTTCCAGTTTCCTGTTTTAAGAGAGCCCCCACAGTCATTTCTTAATACGATGGAAGAGTATATTAGGGAGGCACCACGAGTTGTTACAGTACCAAATGAACCACTGCTGCAACTTACTTACAAGCCGGAAGACTCTCCTTCAGAAGATCCGAACTTACCAACAGATGAACCAGAGGCTTCTCCTTCAGATGATCTCTCTATTACTCCTGTTGAGACGGTTCCAGCACCACCTCCAGCACCAGCTCCTGCTCCAACCCATTCAGAGACTGGAGATTTATTGGGATTGAGTCTTGCTACCACAGAAGTATCCGCCATTGAGGAGAGAAATGCTTTGGCTTTAGCTATAGTTCCTTCTGGTGATGCAGCAGCGTCCACTTTTCATTCCAATGGTGTGCAGGCAAAGGATTTCGATCCTACTGGTTGGGAGCTAGCCTTGGTCACCACTCCAAGTGGTAACCTTTCATCAGCTAATGAGAGACAACTGGCTGGTGGGTTGGACACGCTCACTCTCGATAGTTTATATGATGAAGGTGCATATAGAGCTTCTCTACAGCCAGTGTACGGTAAGCCTGCACCAAACCCATTTGAAGTGCAAGATCCGTTTGCATATTCAAATGCCGTCGCTCCACCTCCATCGGTTCAAATGGCGCCACTAGCTCAGCAGCAGGCGGCGAATCCTTTTGGTCCTTACCAGCCCACCTTCCCACAGCAGCAACAACAACCATTTACAATGGACCCAACAAATCCTTTTGGTGATGCAGGTTTCAGTGCATTCCCTGCTCCTAACCACCATACCGTACCTCCACCCACAAGCAATCCATTCGGAAGCACAGGCCTGCTGTAG 1512 47.35 MNMATLQTWRKAYGALKDSTKVGLAHVNSDYADLDVAIVKATNHVECPPKERHLRKILVATSAIRPRADVAYCIHALARRLSKTQERLECFRILKYDIESERLPRPAQGQDKGYSRTRELDSEELLEHLPALQQLLYRLIGCKPEGAAIGNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALDIYKRAGQQAGSLSDFYDICKGLELARNFQFPVLREPPQSFLNTMEEYIREAPRVVTVPNEPLLQLTYKPEDSPSEDPNLPTDEPEASPSDDLSITPVETVPAPPPAPAPAPTHSETGDLLGLSLATTEVSAIEERNALALAIVPSGDAAASTFHSNGVQAKDFDPTGWELALVTTPSGNLSSANERQLAGGLDTLTLDSLYDEGAYRASLQPVYGKPAPNPFEVQDPFAYSNAVAPPPSVQMAPLAQQQAANPFGPYQPTFPQQQQQPFTMDPTNPFGDAGFSAFPAPNHHTVPPPTSNPFGSTGLL 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5518387 5526944 - CmoCh04G010910.1 Cmo04g01091 380066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01091 503 Gene3D ANTH domain 110 260 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Cmo04g01091 503 MobiDBLite consensus disorder prediction 261 314 - -
Cmo04g01091 503 PANTHER CLATHRIN ASSEMBLY PROTEIN 3 85 IPR045192 GO:0048268|GO:0072583
Cmo04g01091 503 Gene3D - 8 95 IPR008942 -
Cmo04g01091 503 PANTHER CLATHRIN ASSEMBLY PROTEIN 85 484 IPR045192 GO:0048268|GO:0072583
Cmo04g01091 503 SUPERFAMILY GAT-like domain 115 246 - -
Cmo04g01091 503 PANTHER OS05G0549000 PROTEIN 85 484 - -
Cmo04g01091 503 PANTHER OS05G0549000 PROTEIN 3 85 - -
Cmo04g01091 503 ProSiteProfiles ENTH domain profile. 26 174 IPR013809 -
Cmo04g01091 503 MobiDBLite consensus disorder prediction 458 503 - -
Cmo04g01091 503 Pfam ANTH domain 85 246 IPR011417 GO:0005543
Cmo04g01091 503 SUPERFAMILY ENTH/VHS domain 33 94 IPR008942 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01091 - - - csv:101205968 723.776
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00058 Cmo-Chr4:318307 Cmo04g01091 Cmo-Chr4:5518387 3.82E-47 dispersed
Cmo04g01091 Cmo-Chr4:5518387 Cmo05g00750 Cmo-Chr5:3988007 1.79E-38 dispersed
Cmo04g01091 Cmo-Chr4:5518387 Cmo10g00557 Cmo-Chr10:2512065 3.22E-92 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g460 . . . . . . . . Cmo04g01091 . Cma04g01013 Cma04g00065 Car04g00949 Car04g00062 . . . . . . . . . . Cla07g00570 Cam07g0596 Cec07g0663 Cco07g0636 Clacu07g0599 Cmu07g0633 Cre07g0972 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01148 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001235 1 2 1 3 2 3 4 3 2 2 2 2 3 1 2 4 3 4 4 3 2 2 2 2 3 3 2 6 2 2 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01091 Cmo_Chr04 FPKM 14.954023 16.976437 18.492025 18.20517 12.293993 13.193165 11.164215 23.296 24.167379 23.616322