Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01096 ATGAACATGAAGGATAAAGGAGCCATTATCGATCGAGAAAGTGGAAGAGAATTTGGGGGGAAAATTGAAGCGGTGAAGGAAACTGGGGATTTCAGATGGGACTTCAATATCATAACCTCTTCTGGCTATGACTTGATTACCCCTTGGATTGATTGGCTTGCCTTTGAGAGTTTGGTCAGAAAATCAATTTCAGTTGAAGTGTATGCTCCATTAGAAGTGCTTAGATCGATGAAAGATCAGGGATTTCCTAGGAATTTTAGATTATTGGAAGAGCTCGAGCGAGGTGAAAAGGGGATTGGGGATGGAACTGTCAGCTATGGCATGGATGATCCAGATGATTTGCTCATGCAATCTTGGACTGGTACCATTATAGGTCCACCTAATACTGTTCATGAAGGGCGAATCTACCAATTGAAGCTATTTTGTGGAAAGGATTATCCAGATAATCCACCAGCCGTCAGATTCCAAAGTAGGATAAACATGACATGTGTCAATCCCGAAACTGGAATGGTTGAAAGGAACCTCCTTCCCATGCTTGCAAAATGGCAAAGGGAATACACAATGGAGGATATATTAACTCAATTGAAGAAAGAAATGATGTCCTCACAAAATAGGAAGCTGGCTCAGCCTCCTGAAGGTAAGGGTCACCTATGGTTGTATGCAGGGAACAACGTGCTGCAGAAACACGTGGCGTTCTTTGATAGGAACAAAGATGGGGTGGTTTATCCATGGGAGACCTTCAAGGGCTTCCGAGCAATTGGCGCCAATTTCCTATTGTCCGCCGTCGCCGCCGTTTTTATTAACGTTGGACTCAGCTCTAAAACCCGACCGGGGAAATTTCCAAATTTGATGTTCCCAATTGAGATAAAGAACATCCAACTTGCCAAACATGGAAGCGATTCTGGCGTATATGATCAACAGGGAAGATTTGTTGCTACAAAATTTGAAGAAATATTTGGGAAGCATGCCTTAACCTACCCGGATGCGTTGACGGAAGAAGAGGTGAAAGGCTTGCTAAAGACAAATAGAGAACCTAAAGACTACGGTGGATGGGTTGGTGCATGGGCAGAATGGACAATTCTGTACAGTCTTTGCAAAGATGAGAATGGCTTGCTTCAGAAGCAAACTGTGAAGGCTGTTTATGATGGAAGCTTATTTGAAGACATGGAGAAAGAGAGAGCATCAAAAAACAAGAAATGA 1200 43.0 MNMKDKGAIIDRESGREFGGKIEAVKETGDFRWDFNIITSSGYDLITPWIDWLAFESLVRKSISVEVYAPLEVLRSMKDQGFPRNFRLLEELERGEKGIGDGTVSYGMDDPDDLLMQSWTGTIIGPPNTVHEGRIYQLKLFCGKDYPDNPPAVRFQSRINMTCVNPETGMVERNLLPMLAKWQREYTMEDILTQLKKEMMSSQNRKLAQPPEGKGHLWLYAGNNVLQKHVAFFDRNKDGVVYPWETFKGFRAIGANFLLSAVAAVFINVGLSSKTRPGKFPNLMFPIEIKNIQLAKHGSDSGVYDQQGRFVATKFEEIFGKHALTYPDALTEEEVKGLLKTNREPKDYGGWVGAWAEWTILYSLCKDENGLLQKQTVKAVYDGSLFEDMEKERASKNKK 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5550510 5559536 - CmoCh04G010960.1 Cmo04g01096 380071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01096 399 PANTHER INACTIVE PEROXYGENASE-LIKE PROTEIN-RELATED 218 398 - -
Cmo04g01096 399 SMART ubc_7 86 240 - -
Cmo04g01096 399 SUPERFAMILY UBC-like 83 214 IPR016135 -
Cmo04g01096 399 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 83 239 IPR000608 -
Cmo04g01096 399 PANTHER PEROXYGENASE 3-RELATED 218 398 IPR007736 -
Cmo04g01096 399 Pfam Caleosin related protein 223 389 IPR007736 -
Cmo04g01096 399 Pfam Ubiquitin-conjugating enzyme 114 204 IPR000608 -
Cmo04g01096 399 Gene3D Ubiquitin Conjugating Enzyme 70 216 IPR016135 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01096 Cmo15g01023 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00069 Cmo-Chr4:374026 Cmo04g01096 Cmo-Chr4:5550510 2.17E-92 dispersed
Cmo04g01096 Cmo-Chr4:5550510 Cmo04g02211 Cmo-Chr4:16474345 7.05E-80 dispersed
Cmo04g00068 Cmo-Chr4:370805 Cmo04g01096 Cmo-Chr4:5550510 4.56E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01096 K17991 - csv:101213829 314.309