Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01101 ATGCTCATTCCTACTGCCCTCAACGCCCTCAAATCCTCAAGGTCAATATCTTGGTCGCCGACGGGTAGGTTCCAGCAAACCTTGGCGGGATGCCTGGAGCTGAGTGGGATATCTCTGCATTCAGGGAAGGTTTCGAAAGTGAAGTTATGTCCGGAATTTGCAGGCAGAGGGAGGTATTTTGATTTCAAGTCCAACTTCATTCCTGCCTCGATCGATTATGCCGAAGAGTCGTCTCTTTGTACGACGCTCTCTAAGGATGGGTTTAAAATTCGTACGGTTGAGCATTTGCTTTCTGCCCTGGAGGCCATGGGGGTTGACAATTGTAGGATTGAGATAGCGAATGAAGACGCTAAAGACAGTGAAGTCGAGGTTCCAATTTTTGATGGATCTGCGTGTAAATGGGTGGATGCAATAGAGGAGGTTGGTCTTAAGTTGGCTATAGACCAGCGTGGCAACTGCTGTGAAAAAATGGCACCATATGTAAATCAACCTGTCTATGCGTGGAGGAATGACTGTTATCTTGTTGCTTTTCCAGCCAAAGCAGTTCGTATTACTTATGGAATTGACTTTCCTCAGGTGCCTGGCATTGGCTGCCAATGGTTTTCTACTGCTCCTTTGGACAATATGTTCTATGCCGAGCAAATAGCTCCATCAAGAACCTTTTGCATTTACGAGGAGGTAGAGCAAATGCGTAATATGGGGCTCATAAGAGGAGGCTCAATAGAAAATGCTTTAGTTTGCAGTGTCAGTAAAGGTTGGATCAATCCCCCATTGCGTTTCCATGATGAACCTTGTCGCCACAAGGTTTTAGATTTCATTGGTGATATATCACTTTTTGCACGGTTAGGCAGTCAAGGGCTTCCGGTGGCACACCTAGTGGTTTACAAGGGTGGTCATTCTATGCATGCCAATTTTGTTCGCCGCCTATCGGAAAACATTTGA 942 45.86 MLIPTALNALKSSRSISWSPTGRFQQTLAGCLELSGISLHSGKVSKVKLCPEFAGRGRYFDFKSNFIPASIDYAEESSLCTTLSKDGFKIRTVEHLLSALEAMGVDNCRIEIANEDAKDSEVEVPIFDGSACKWVDAIEEVGLKLAIDQRGNCCEKMAPYVNQPVYAWRNDCYLVAFPAKAVRITYGIDFPQVPGIGCQWFSTAPLDNMFYAEQIAPSRTFCIYEEVEQMRNMGLIRGGSIENALVCSVSKGWINPPLRFHDEPCRHKVLDFIGDISLFARLGSQGLPVAHLVVYKGGHSMHANFVRRLSENI 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5603933 5611670 + CmoCh04G011010.1 Cmo04g01101 380076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01101 313 Gene3D lpxc deacetylase, domain 2 160 313 IPR011334 GO:0008759|GO:0009245
Cmo04g01101 313 Gene3D lpxc deacetylase, domain 1 23 150 IPR015870 GO:0008759|GO:0009245
Cmo04g01101 313 SUPERFAMILY Ribosomal protein S5 domain 2-like 24 144 IPR020568 -
Cmo04g01101 313 TIGRFAM lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 25 310 IPR004463 GO:0008759|GO:0009245
Cmo04g01101 313 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 25 310 IPR004463 GO:0008759|GO:0009245
Cmo04g01101 313 SUPERFAMILY Ribosomal protein S5 domain 2-like 163 311 IPR020568 -
Cmo04g01101 313 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 1 312 IPR004463 GO:0008759|GO:0009245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01101 K02535 - csv:101205101 578.556