Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01112 ATGGTTTCAAGGTCGTATTCCAATTTACTTGAACTCGCCACCGGAGAATCGCCGTCTTTCGGCCGTATGAACCGCCAAATCCCTCGGATTATGACTGTCGCCGGTTTAATCTCCGACATCGATGACGATCGACCAGAGAGCGTCTCATCGGAGCCGTCGTCCTCCTCCGCCCTTCGTGACCGGATTATCATTGTAGCCAATGAGCTCCCCATCAGAGCTCAGCGGAAATCAGGCGGCGGCTGGATTTTCAGCTGGGATGAAAATTCCCTTCTCCTGCAGCTGAAAGATGGGTTGGGTGATGATGATTTTGAGGTGTTTTATGTGGGTTGTCTCAAGGAAGATATTCAGGTAAATGAACAAGATGAGGTATCTCAAATACTCTTAGAAACATTTAAATGTGTACCAACGTTTCTGACTCAAGAGCTTTACACTAGTTACTATCATGGCTTCTGTAAGCAACAGCTATGGCCTCTGTTTCATTACATGTTGCCTCTGTCGCCTGACCTCGGCGGTCGGTTTAACCGACCGCTGTGGCAGGCTTATGTTTCTGTGAATAAGATCTTTGCTGATAGGATCATGGAAGTGATCAATCCTGAGGATGATTTTGTTTGGATTCATGATTATCATCTCATGGTGTTGCCTACTTTTCTTAGGAAGAGATTCAATAGAGTCAAGCTTGGATTCTTTCTGCATAGTCCGTTCCCGTCGTCTGAGATATATCGAACACTACCGATTCGGGAGGAGCTCTTACGAGCGCTCCTGAATTCGGATTTGATAGGGTTTCATACATTTGATTATGCTAGGCATTTTCTTTCTTGTTGTAGTAGGATGCTTGGTCTAAGGTACGAGTCGAAACGGGGTTATATTGGGATAGAGTATTATGGTCGAACCATTAGTATTAAGATCCTTCCTGTTGGGATTCATATGGGTCAACTTCAATCTGTTTTGAGCCTTCAGAAGACAGAGGAGAAGGTTGCAGAGCTTATCGAACAGTTTCGTGATCGAGATAGGATAATGTTGCTCGGTGTTGACGATATGGACATATTTAAGGGTATTAGTTTGAAGCTTTTGGCTATGGAGCAGTTGTTGATCACACACCCTGAATGGCAGGGGAAAGTAGTATTGGTGCAGATTGCCAATCCTGCGAGAGGCCGAGGGAAAGATGTGAAAGAAGTTCAGGATGAGACGAAGGCAGCTGTTAAGCGGATTAACGACACGTTTGGGAAACCGGGGTACGAGCCAGTTATGTTGATTGAGGAGCCACTGAAATTCTATGAGAGAGTTGCATATTATACCGTTGCCGAATGTTGTTTGGTCACTGCAGTTCGGGACGGTATGAATCTCATTCCATATGAGTATATTGTCAGCCGCCAAGGGAACGATAAGTTAGATAAGCTCTTGGGGTGTGAATCATCAGCTCTGAAGAAGAGTATGTTGGTTATATCTGAATTCATTGGGTGCTCTCCGTCCTTAAGCGGAGCAATTCGAGTTAATCCGTGGAATATTGATGCTGTAGCTGATGCAATGGAATGTGCATTAGAGATGGAAGACGCCGAAAAGCAGCTCCGCCATGAGAAGCATTTTAGATATGTGAGCACGCACGATGTTGGGTATTGGGCTCGAAGTTTCCTACTAGATTTGGAGAGGGCTTGTCGGGATCATGTGAGGCAGAGATGTTGGGGTATTGGGTTCGGTTTAAGTTTTAGAGTTGTGGCTCTTGATCCGAACTTCAGGAAGCTGGCATTGGAACACATATTTTCGACTTATAAGAGGACGAAATCTCGAGCTATTCTTTTGGACTATGATGGTACATTAATGCCTCAAGCTTCGATTGATAAGAGTCCTACTTCAAAATGCCTCGAAACGCTTAATACCTTGTGTCGAGATAAGAACAATATGGTATTCATTGTGAGTGCAAAAAGCCGAAAGAAACTTGCCGAATGGTTCGGCCCTTGTGAAAATCTCGGCATTGCTGCCGAGCACGGATACTTTATTAGGATGAAGCAGGATGAGGAATGGGAAACCAGTTTACCAGTTGCAGATTGCTATTGGAAGCAGATCGTGCAGCCCGTTATGAAACTCTACACCGAAACAACCGATGGTTCGACAATCGAAGATCGAGAAACTGCGCTTGGATGGTGTTACGAAGATGCAGATCCAGATTTTGGTTCGTGTCAAGCTAAGGAGCTCTTCGATCATCTCGAAAGTGTCCTAGCCAATGAACCAGTTACAGTCAAGAGTGGTCAAAATATTGTGGAAGTTAAACCACAGGGTGTTAGCAAGGGTCTTGTAGCTAAACGACTTCTCTCCGCAATGCAAGAGAAGGGGACCCCTGCAGATTTTGTTCTATGCATCGGTGATGACAGATCAGACGAAGACATGTTCAAGGTGATTTCGAGTTCCATGGAAGGCCCATTGATCTTGCCTCGAGCTGAAATTTTTGCATGTACAGTGGGGAGAAAACCGAGCAAAGCCAAGTATTACCTCGACGATCCATCAGAAATTGCAAGGTTGATGCACGGTTTGGCTACGGTGTCGAGGCAAAACGGCACGCTTTATCCATCACAAGGTGCATGA 2577 45.21 MVSRSYSNLLELATGESPSFGRMNRQIPRIMTVAGLISDIDDDRPESVSSEPSSSSALRDRIIIVANELPIRAQRKSGGGWIFSWDENSLLLQLKDGLGDDDFEVFYVGCLKEDIQVNEQDEVSQILLETFKCVPTFLTQELYTSYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRPLWQAYVSVNKIFADRIMEVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLRYESKRGYIGIEYYGRTISIKILPVGIHMGQLQSVLSLQKTEEKVAELIEQFRDRDRIMLLGVDDMDIFKGISLKLLAMEQLLITHPEWQGKVVLVQIANPARGRGKDVKEVQDETKAAVKRINDTFGKPGYEPVMLIEEPLKFYERVAYYTVAECCLVTAVRDGMNLIPYEYIVSRQGNDKLDKLLGCESSALKKSMLVISEFIGCSPSLSGAIRVNPWNIDAVADAMECALEMEDAEKQLRHEKHFRYVSTHDVGYWARSFLLDLERACRDHVRQRCWGIGFGLSFRVVALDPNFRKLALEHIFSTYKRTKSRAILLDYDGTLMPQASIDKSPTSKCLETLNTLCRDKNNMVFIVSAKSRKKLAEWFGPCENLGIAAEHGYFIRMKQDEEWETSLPVADCYWKQIVQPVMKLYTETTDGSTIEDRETALGWCYEDADPDFGSCQAKELFDHLESVLANEPVTVKSGQNIVEVKPQGVSKGLVAKRLLSAMQEKGTPADFVLCIGDDRSDEDMFKVISSSMEGPLILPRAEIFACTVGRKPSKAKYYLDDPSEIARLMHGLATVSRQNGTLYPSQGA 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5669684 5673607 + CmoCh04G011120.1 Cmo04g01112 380087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01112 858 SUPERFAMILY HAD-like 595 842 IPR036412 -
Cmo04g01112 858 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 849 IPR001830 GO:0003824|GO:0005992
Cmo04g01112 858 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 597 798 IPR006379 -
Cmo04g01112 858 Gene3D - 724 852 IPR023214 -
Cmo04g01112 858 Gene3D - 594 712 IPR023214 -
Cmo04g01112 858 CDD HAD_TPP 596 834 - -
Cmo04g01112 858 Gene3D Glycogen Phosphorylase B; 54 314 - -
Cmo04g01112 858 Pfam Trehalose-phosphatase 598 833 IPR003337 GO:0003824|GO:0005992
Cmo04g01112 858 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6 1 849 - -
Cmo04g01112 858 CDD GT20_TPS 61 548 IPR001830 GO:0003824|GO:0005992
Cmo04g01112 858 TIGRFAM T6PP: trehalose-phosphatase 593 842 IPR003337 GO:0003824|GO:0005992
Cmo04g01112 858 Gene3D Glycogen Phosphorylase B; 315 532 - -
Cmo04g01112 858 Pfam Glycosyltransferase family 20 61 548 IPR001830 GO:0003824|GO:0005992
Cmo04g01112 858 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 552 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01112 Cmo-Chr4:5669684 Cmo19g01042 Cmo-Chr19:9093586 0 dispersed
Cmo18g00419 Cmo-Chr18:2755285 Cmo04g01112 Cmo-Chr4:5669684 1.19E-146 dispersed
Cmo06g00655 Cmo-Chr6:3295418 Cmo04g01112 Cmo-Chr4:5669684 0 transposed
Cmo16g01224 Cmo-Chr16:8764732 Cmo04g01112 Cmo-Chr4:5669684 0 transposed
Cmo04g00084 Cmo-Chr4:456515 Cmo04g01112 Cmo-Chr4:5669684 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01112 K16055 - vvi:100252552 1477.61