Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01120 ATGTGGTGGCTGGTGACATTGCAGTCGGGAGATTATTGGGGAATCTTATATTTGAGTATCAACCTTATCCACCGTCGCCGATTTCCATCGCGCTCTTTTTTGGACTTCATCGCCGAACTCAACGAATCAACTCGATCGTTTCTGGAGCTGGAAGAATCTGGTTCAGCACCGATGAAAATCCATTACATTCCTTGCTTGGAAGACAACTACTCTTACCTGATCATCGATGAGAGCACTAAAGAAGCCGCGGTCGTTGATCCTGTGGAGCCAGAGAAGATTCTGAATGTTGCTAATGAACATGGCGTCCATCTCAAGCTCGTTCTTACGACTCATCATCACTGGGATCATGCGGGAGGCAATGAGAAAATAAAGCAGCTGGTTCCTGGAATTAAAGTATATGGCGGTTCCATTGATAAGGTCAAGGGTTGTACAGATGCAGTAGAAAATGGGGATAAGATAACACTTGGTGCTGATGTTGTTATACTGTCTCTTCATACACCTTGCCACACCAAAGGGCATATAAGTTATTACGTCTCTAGCAAAGAGGGTGAGGACCCAGCTGTCTTCACTGGTGATACACTGTTCATTGCTGGGTGTGGTAAGTTTTTTGAGGGAACAGCAGAGCAGATGTATCAATCTCTATGCGTCACATTGGGTTCACTGCCAAAGCAAACACGAGTGTATTGTGGCCATGAGTATACGGTGAAGAACTTGCTGTTTGCTCTGACAGTTGAACCAGACAACGAGAAGATAAAAGGTAAGTTGTTGTGGGCTCAGGGCCAGCGGCAAGCCGGACACGCCACTGTTCCCTCGACCATTGAAGAAGAAATGGAGACAAATCCTTTCATGCGAGTTGATCTACCTCAACTTCAGGAGAGGGTAAGTAGTCATTCTCCGGTAGAAGCTATTGGAGAAATCAGGCGGCTAAAGGACATCTGGAAGGGGTGCAACTGCAACTTTCTTTCTTTCAACTGTGGTAATTACCATTATGTTTCACACTTTTATATGGCATTGGAGTCTTGTGCATATTACAGAAGTTGCATTTTTTGTGCCAATACGACTCGGCTTCCTCGGGAACTCCCTTCCCTTCCACCCTTTGCTTTTCTCTACGTCCCATTCTCCATTCAATTCTTCATTTTTTCCTCACCCATTTTCTTCAATTTTCTTTTCCTTCCCCAAATCCACCGGCGACCCTCCGACCCATCTCCCTCCGCCGCCTTCCGACGGAATCACCGTCATTACCAGCTGTTTAGGCCTGTTTTCTCGTTGCCCATCATCGTAATTTTGTTTTCAGGCGGTGGGATTTCGAGGGGTCGGATCGGTATAGGTTTTGAAAGGAGGGGGAAGATGGAGACATCGGCTTCTAATTCCGATCCTTACTCCAATTCTTCTTCACCCACAAGTGCTCGTACCTCCTCCAGATATGGGGTCTCGCTCCCTTCGCTGAATTTCTTCCGTTCGCCTTTGTCCGTTATCTTGGATTACTCTGGAATTCTTCCCACTAGGGCTGTTCGTCATGAATCGGAGCCTGTAATCAACGCCGCTTCCACTCCTGATTTGCGGGTTTATTCTCAAAATCAAAATCACTTAATGACCACTTCTTCGTCTTCTACTGCCTCAACCTCTTCCGGTAATACCGTCTCCTCTGGGGAGGTTTCGATTAGGATTATTGGGTCTGGTGAGCAAGATCCTTCTCCCAGTGTGTTGTTGCCGCCAAATCAGGCTCCGGTTGGACAAGCGGGTTATGAGCAAAATGCCAGGCTTCCTATTTCTGGGGATCAGCCGGAATCCCCTGACGAGGAACGAGTTCCTTTGGTGTCAACTTCTTCTTCATCTATTCAATCTGGAAGCAGTCGTGTCCATGCAGAATCTGGAAATGGCACGGAAGAGACTGCCAATAGAGATTCGTCATACCAGAGATATGATATTCAGCAGGTTGCCAGATGGATTGAACAGATTCTTCCATTCTCTTTGCTATTGCTGATAGTCTTTATCCGTCAGCATTTAGAAGGTTTTTTCATCACAATTTGGGTATCAGCTGTTCTGTATAAGTCGAACGATATTGTCAAGAAACAGACTGCTCTAAAGGGGGAGAGGAAAATTTTTGTCCTTGCCGGTACTTCTATCGCATTTTTGGTTCATGTAATTGGGATTTACTGGTGGTGTCATAGTGATGATCTTCTGTCCCCGTTAGTCATGCTTCCACCGAAGACAGTTCCACCTTTTTGGCATGCCTTGTACATCATTTTGGTTAACGATACGATGGTGAGGCAGTTGGCAATGGCTTTCAAATGTCTTCTTCTTATCTACTACAAAAATGGCAGAGGCCATAATTTTCGCCGGCAGGGTCAAATTTTAACGCTTGTGGAATACTCTCTTCTGTTGTACCGTGCATTATTACCAGCACCCGTATGGTACCGGTTCTTTTTGAATAAAGATCAAGGGAGCCTCTTTTCATCACTGACAACAGGATTGTATTTAACCTTCAAGCTAACGTCTGTGGTTGAGAAGATTCAATCATTCGTTGCTGCATTTAAGGCTCTATCACAAAAAGAAGTTCATTATGGATCATATGCCACATCAGAACAGGTAAATGCTGCGGGAGACCTCTGTGCTATCTGCCAGGAGAAGATGAATGCTCCAATCCTGTTACGTTGTAAGCACATCTTTTGTGAAGATTGTGTTTCTGAATGGTTTGAAAGAGAAAGAACTTGCCCTCTTTGCCGGGCACTCGTAAAGCCTGCAGAACTTCGAACATTCGGTGATGGGTCAACCAGCTTACTCTTCCAGTTGTTTTAG 2799 45.34 MWWLVTLQSGDYWGILYLSINLIHRRRFPSRSFLDFIAELNESTRSFLELEESGSAPMKIHYIPCLEDNYSYLIIDESTKEAAVVDPVEPEKILNVANEHGVHLKLVLTTHHHWDHAGGNEKIKQLVPGIKVYGGSIDKVKGCTDAVENGDKITLGADVVILSLHTPCHTKGHISYYVSSKEGEDPAVFTGDTLFIAGCGKFFEGTAEQMYQSLCVTLGSLPKQTRVYCGHEYTVKNLLFALTVEPDNEKIKGKLLWAQGQRQAGHATVPSTIEEEMETNPFMRVDLPQLQERVSSHSPVEAIGEIRRLKDIWKGCNCNFLSFNCGNYHYVSHFYMALESCAYYRSCIFCANTTRLPRELPSLPPFAFLYVPFSIQFFIFSSPIFFNFLFLPQIHRRPSDPSPSAAFRRNHRHYQLFRPVFSLPIIVILFSGGGISRGRIGIGFERRGKMETSASNSDPYSNSSSPTSARTSSRYGVSLPSLNFFRSPLSVILDYSGILPTRAVRHESEPVINAASTPDLRVYSQNQNHLMTTSSSSTASTSSGNTVSSGEVSIRIIGSGEQDPSPSVLLPPNQAPVGQAGYEQNARLPISGDQPESPDEERVPLVSTSSSSIQSGSSRVHAESGNGTEETANRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFITIWVSAVLYKSNDIVKKQTALKGERKIFVLAGTSIAFLVHVIGIYWWCHSDDLLSPLVMLPPKTVPPFWHALYIILVNDTMVRQLAMAFKCLLLIYYKNGRGHNFRRQGQILTLVEYSLLLYRALLPAPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKIQSFVAAFKALSQKEVHYGSYATSEQVNAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQLF 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5713697 5727976 - CmoCh04G011200.1 Cmo04g01120 380095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01120 932 SUPERFAMILY Metallo-hydrolase/oxidoreductase 58 313 IPR036866 -
Cmo04g01120 932 CDD RING-HC_RNFT1_like 870 909 - -
Cmo04g01120 932 Pfam Metallo-beta-lactamase superfamily 70 204 IPR001279 -
Cmo04g01120 932 SMART Lactamase_B_5a 68 231 IPR001279 -
Cmo04g01120 932 MobiDBLite consensus disorder prediction 603 636 - -
Cmo04g01120 932 TIGRFAM GSH_gloB: hydroxyacylglutathione hydrolase 60 313 IPR017782 GO:0004416|GO:0019243
Cmo04g01120 932 SMART ring_2 871 908 IPR001841 -
Cmo04g01120 932 MobiDBLite consensus disorder prediction 453 474 - -
Cmo04g01120 932 Gene3D - 58 317 IPR036866 -
Cmo04g01120 932 CDD hydroxyacylglutathione_hydrolase_MBL-fold 61 231 IPR035680 -
Cmo04g01120 932 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 450 932 IPR044235 GO:0061630|GO:1904294
Cmo04g01120 932 Pfam Hydroxyacylglutathione hydrolase C-terminus 232 312 IPR032282 -
Cmo04g01120 932 ProSitePatterns Zinc finger RING-type signature. 886 895 IPR017907 -
Cmo04g01120 932 MobiDBLite consensus disorder prediction 451 474 - -
Cmo04g01120 932 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 845 918 IPR013083 -
Cmo04g01120 932 SUPERFAMILY RING/U-box 864 914 - -
Cmo04g01120 932 MobiDBLite consensus disorder prediction 530 636 - -
Cmo04g01120 932 MobiDBLite consensus disorder prediction 530 555 - -
Cmo04g01120 932 Hamap Hydroxyacylglutathione hydrolase [gloB]. 58 313 IPR017782 GO:0004416|GO:0019243
Cmo04g01120 932 Pfam Zinc finger, C3HC4 type (RING finger) 869 912 - -
Cmo04g01120 932 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 450 932 - -
Cmo04g01120 932 ProSiteProfiles Zinc finger RING-type profile. 871 909 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01334 Cmo-Chr1:10581619 Cmo04g01120 Cmo-Chr4:5713697 2.59E-22 dispersed
Cmo03g00286 Cmo-Chr3:4090919 Cmo04g01120 Cmo-Chr4:5713697 2.57E-145 dispersed
Cmo04g00409 Cmo-Chr4:2024454 Cmo04g01120 Cmo-Chr4:5713697 2.64E-11 dispersed
Cmo04g01120 Cmo-Chr4:5713697 Cmo07g01242 Cmo-Chr7:6789457 0 dispersed
Cmo04g00096 Cmo-Chr4:503942 Cmo04g01120 Cmo-Chr4:5713697 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01120 - K22379 csv:101207430 817.379