Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g01120 | ATGTGGTGGCTGGTGACATTGCAGTCGGGAGATTATTGGGGAATCTTATATTTGAGTATCAACCTTATCCACCGTCGCCGATTTCCATCGCGCTCTTTTTTGGACTTCATCGCCGAACTCAACGAATCAACTCGATCGTTTCTGGAGCTGGAAGAATCTGGTTCAGCACCGATGAAAATCCATTACATTCCTTGCTTGGAAGACAACTACTCTTACCTGATCATCGATGAGAGCACTAAAGAAGCCGCGGTCGTTGATCCTGTGGAGCCAGAGAAGATTCTGAATGTTGCTAATGAACATGGCGTCCATCTCAAGCTCGTTCTTACGACTCATCATCACTGGGATCATGCGGGAGGCAATGAGAAAATAAAGCAGCTGGTTCCTGGAATTAAAGTATATGGCGGTTCCATTGATAAGGTCAAGGGTTGTACAGATGCAGTAGAAAATGGGGATAAGATAACACTTGGTGCTGATGTTGTTATACTGTCTCTTCATACACCTTGCCACACCAAAGGGCATATAAGTTATTACGTCTCTAGCAAAGAGGGTGAGGACCCAGCTGTCTTCACTGGTGATACACTGTTCATTGCTGGGTGTGGTAAGTTTTTTGAGGGAACAGCAGAGCAGATGTATCAATCTCTATGCGTCACATTGGGTTCACTGCCAAAGCAAACACGAGTGTATTGTGGCCATGAGTATACGGTGAAGAACTTGCTGTTTGCTCTGACAGTTGAACCAGACAACGAGAAGATAAAAGGTAAGTTGTTGTGGGCTCAGGGCCAGCGGCAAGCCGGACACGCCACTGTTCCCTCGACCATTGAAGAAGAAATGGAGACAAATCCTTTCATGCGAGTTGATCTACCTCAACTTCAGGAGAGGGTAAGTAGTCATTCTCCGGTAGAAGCTATTGGAGAAATCAGGCGGCTAAAGGACATCTGGAAGGGGTGCAACTGCAACTTTCTTTCTTTCAACTGTGGTAATTACCATTATGTTTCACACTTTTATATGGCATTGGAGTCTTGTGCATATTACAGAAGTTGCATTTTTTGTGCCAATACGACTCGGCTTCCTCGGGAACTCCCTTCCCTTCCACCCTTTGCTTTTCTCTACGTCCCATTCTCCATTCAATTCTTCATTTTTTCCTCACCCATTTTCTTCAATTTTCTTTTCCTTCCCCAAATCCACCGGCGACCCTCCGACCCATCTCCCTCCGCCGCCTTCCGACGGAATCACCGTCATTACCAGCTGTTTAGGCCTGTTTTCTCGTTGCCCATCATCGTAATTTTGTTTTCAGGCGGTGGGATTTCGAGGGGTCGGATCGGTATAGGTTTTGAAAGGAGGGGGAAGATGGAGACATCGGCTTCTAATTCCGATCCTTACTCCAATTCTTCTTCACCCACAAGTGCTCGTACCTCCTCCAGATATGGGGTCTCGCTCCCTTCGCTGAATTTCTTCCGTTCGCCTTTGTCCGTTATCTTGGATTACTCTGGAATTCTTCCCACTAGGGCTGTTCGTCATGAATCGGAGCCTGTAATCAACGCCGCTTCCACTCCTGATTTGCGGGTTTATTCTCAAAATCAAAATCACTTAATGACCACTTCTTCGTCTTCTACTGCCTCAACCTCTTCCGGTAATACCGTCTCCTCTGGGGAGGTTTCGATTAGGATTATTGGGTCTGGTGAGCAAGATCCTTCTCCCAGTGTGTTGTTGCCGCCAAATCAGGCTCCGGTTGGACAAGCGGGTTATGAGCAAAATGCCAGGCTTCCTATTTCTGGGGATCAGCCGGAATCCCCTGACGAGGAACGAGTTCCTTTGGTGTCAACTTCTTCTTCATCTATTCAATCTGGAAGCAGTCGTGTCCATGCAGAATCTGGAAATGGCACGGAAGAGACTGCCAATAGAGATTCGTCATACCAGAGATATGATATTCAGCAGGTTGCCAGATGGATTGAACAGATTCTTCCATTCTCTTTGCTATTGCTGATAGTCTTTATCCGTCAGCATTTAGAAGGTTTTTTCATCACAATTTGGGTATCAGCTGTTCTGTATAAGTCGAACGATATTGTCAAGAAACAGACTGCTCTAAAGGGGGAGAGGAAAATTTTTGTCCTTGCCGGTACTTCTATCGCATTTTTGGTTCATGTAATTGGGATTTACTGGTGGTGTCATAGTGATGATCTTCTGTCCCCGTTAGTCATGCTTCCACCGAAGACAGTTCCACCTTTTTGGCATGCCTTGTACATCATTTTGGTTAACGATACGATGGTGAGGCAGTTGGCAATGGCTTTCAAATGTCTTCTTCTTATCTACTACAAAAATGGCAGAGGCCATAATTTTCGCCGGCAGGGTCAAATTTTAACGCTTGTGGAATACTCTCTTCTGTTGTACCGTGCATTATTACCAGCACCCGTATGGTACCGGTTCTTTTTGAATAAAGATCAAGGGAGCCTCTTTTCATCACTGACAACAGGATTGTATTTAACCTTCAAGCTAACGTCTGTGGTTGAGAAGATTCAATCATTCGTTGCTGCATTTAAGGCTCTATCACAAAAAGAAGTTCATTATGGATCATATGCCACATCAGAACAGGTAAATGCTGCGGGAGACCTCTGTGCTATCTGCCAGGAGAAGATGAATGCTCCAATCCTGTTACGTTGTAAGCACATCTTTTGTGAAGATTGTGTTTCTGAATGGTTTGAAAGAGAAAGAACTTGCCCTCTTTGCCGGGCACTCGTAAAGCCTGCAGAACTTCGAACATTCGGTGATGGGTCAACCAGCTTACTCTTCCAGTTGTTTTAG | 2799 | 45.34 | MWWLVTLQSGDYWGILYLSINLIHRRRFPSRSFLDFIAELNESTRSFLELEESGSAPMKIHYIPCLEDNYSYLIIDESTKEAAVVDPVEPEKILNVANEHGVHLKLVLTTHHHWDHAGGNEKIKQLVPGIKVYGGSIDKVKGCTDAVENGDKITLGADVVILSLHTPCHTKGHISYYVSSKEGEDPAVFTGDTLFIAGCGKFFEGTAEQMYQSLCVTLGSLPKQTRVYCGHEYTVKNLLFALTVEPDNEKIKGKLLWAQGQRQAGHATVPSTIEEEMETNPFMRVDLPQLQERVSSHSPVEAIGEIRRLKDIWKGCNCNFLSFNCGNYHYVSHFYMALESCAYYRSCIFCANTTRLPRELPSLPPFAFLYVPFSIQFFIFSSPIFFNFLFLPQIHRRPSDPSPSAAFRRNHRHYQLFRPVFSLPIIVILFSGGGISRGRIGIGFERRGKMETSASNSDPYSNSSSPTSARTSSRYGVSLPSLNFFRSPLSVILDYSGILPTRAVRHESEPVINAASTPDLRVYSQNQNHLMTTSSSSTASTSSGNTVSSGEVSIRIIGSGEQDPSPSVLLPPNQAPVGQAGYEQNARLPISGDQPESPDEERVPLVSTSSSSIQSGSSRVHAESGNGTEETANRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFITIWVSAVLYKSNDIVKKQTALKGERKIFVLAGTSIAFLVHVIGIYWWCHSDDLLSPLVMLPPKTVPPFWHALYIILVNDTMVRQLAMAFKCLLLIYYKNGRGHNFRRQGQILTLVEYSLLLYRALLPAPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKIQSFVAAFKALSQKEVHYGSYATSEQVNAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQLF | 932 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5713697 | 5727976 | - | CmoCh04G011200.1 | Cmo04g01120 | 380095 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g01120 | 932 | SUPERFAMILY | Metallo-hydrolase/oxidoreductase | 58 | 313 | IPR036866 | - | |
Cmo04g01120 | 932 | CDD | RING-HC_RNFT1_like | 870 | 909 | - | - | |
Cmo04g01120 | 932 | Pfam | Metallo-beta-lactamase superfamily | 70 | 204 | IPR001279 | - | |
Cmo04g01120 | 932 | SMART | Lactamase_B_5a | 68 | 231 | IPR001279 | - | |
Cmo04g01120 | 932 | MobiDBLite | consensus disorder prediction | 603 | 636 | - | - | |
Cmo04g01120 | 932 | TIGRFAM | GSH_gloB: hydroxyacylglutathione hydrolase | 60 | 313 | IPR017782 | GO:0004416|GO:0019243 | |
Cmo04g01120 | 932 | SMART | ring_2 | 871 | 908 | IPR001841 | - | |
Cmo04g01120 | 932 | MobiDBLite | consensus disorder prediction | 453 | 474 | - | - | |
Cmo04g01120 | 932 | Gene3D | - | 58 | 317 | IPR036866 | - | |
Cmo04g01120 | 932 | CDD | hydroxyacylglutathione_hydrolase_MBL-fold | 61 | 231 | IPR035680 | - | |
Cmo04g01120 | 932 | PANTHER | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN | 450 | 932 | IPR044235 | GO:0061630|GO:1904294 | |
Cmo04g01120 | 932 | Pfam | Hydroxyacylglutathione hydrolase C-terminus | 232 | 312 | IPR032282 | - | |
Cmo04g01120 | 932 | ProSitePatterns | Zinc finger RING-type signature. | 886 | 895 | IPR017907 | - | |
Cmo04g01120 | 932 | MobiDBLite | consensus disorder prediction | 451 | 474 | - | - | |
Cmo04g01120 | 932 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 845 | 918 | IPR013083 | - | |
Cmo04g01120 | 932 | SUPERFAMILY | RING/U-box | 864 | 914 | - | - | |
Cmo04g01120 | 932 | MobiDBLite | consensus disorder prediction | 530 | 636 | - | - | |
Cmo04g01120 | 932 | MobiDBLite | consensus disorder prediction | 530 | 555 | - | - | |
Cmo04g01120 | 932 | Hamap | Hydroxyacylglutathione hydrolase [gloB]. | 58 | 313 | IPR017782 | GO:0004416|GO:0019243 | |
Cmo04g01120 | 932 | Pfam | Zinc finger, C3HC4 type (RING finger) | 869 | 912 | - | - | |
Cmo04g01120 | 932 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 450 | 932 | - | - | |
Cmo04g01120 | 932 | ProSiteProfiles | Zinc finger RING-type profile. | 871 | 909 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01334 | Cmo-Chr1:10581619 | Cmo04g01120 | Cmo-Chr4:5713697 | 2.59E-22 | dispersed | |
Cmo03g00286 | Cmo-Chr3:4090919 | Cmo04g01120 | Cmo-Chr4:5713697 | 2.57E-145 | dispersed | |
Cmo04g00409 | Cmo-Chr4:2024454 | Cmo04g01120 | Cmo-Chr4:5713697 | 2.64E-11 | dispersed | |
Cmo04g01120 | Cmo-Chr4:5713697 | Cmo07g01242 | Cmo-Chr7:6789457 | 0 | dispersed | |
Cmo04g00096 | Cmo-Chr4:503942 | Cmo04g01120 | Cmo-Chr4:5713697 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g01120 | - | K22379 | csv:101207430 | 817.379 |