Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01127 ATGCGAGGTTTGTTGAAGATGAAACGGCTTATTGAGCTCTTCGTCTTGTTCGTTTTGGCTCCACTCTGTGCTAGATGCGTAAACCTACCTTTAAACGACGACGTTTTGGGCCTGATAGTGTTTAAAGCCGATGTTCAAGATCCGAAGCTGAAGCTCGCGACGTGGAACGAAGATGACGATAATCCCTGCAACTGGACTGGCGTCAAATGCAGTCCCGGATCCAATCGGGTCGTCGAACTCAACCTCAATGGATTCTCTCTCTCGGGTCGACTCGGCCGTGGACTTTTCCAGTTGGAGTTTCTGCAGAGATTGTCGCTCGCGAAGAACAATCTTAGTGGAAATATAAACCCCAATTTCTCTCGGGTCGGCAATCTTCAGGTGATTGATTTGAGTGGGAATAATTTCTCCGGTACTGTTCCGGATGAAGTTTTTACTCAATGTGGGTCTCTGAGAGTCATCTCTTTGGCTAACAACAAATTTTTTGGGAAAATTCCTGATAGTTTGAGCTTTTGTGGGAGTCTTATTGCAGTTAACTTGTCCTCGAATCAGTTTTCGGGTTCTTTGCCTTCTGGGATTTGGTCTTTTAGTGGGCTTCGATCTTTGGACTTGTCTGATAATGCTCTGGTGGGTGAAATTCCTAATGTAATTGAGAATTTGTATAATCTGCGGACTCTTAACTTGAGCAGGAATCGATTTTCTGGACAGATTCCTGATGGTATTGGGAACTGTTTGCTTCTGAGATCCATTGATCTTAGTAGGAATTCATTCTCTGGGAATCTTCCTCAGACAATGCAGAGACTTGTTTTGTGTGGTAATCTTATCTTAAGCAGGAATTTGTTGGAAGGTGATGTTCCAGAGTGGATAGGAGGAATGAAAAGCCTTGAAACTCTGGACTTCTCTGGGAACAATTTTACTGGCCGTATTCCTTCTACAATGGAAAATCTGCAATATCTAAAAGTATTGCATCTCTCTTCAAATGGCTTTACTGATAGCTTTCCGGAGTCTGTGATGAAATGCCAAAGCCTTTTGGCAATAGATTTCAGTCATAATTTGATCACGGGTAATCTTCCGCCAACTGGAAGTTTAGCCAAGCTGCAGTTTCTAAACCTGTCCGGGAATTCTTTTGTTGGTCCTATTCCAGAAACTATTGGAGATCTGAAATCTTTGAGCATTCTTGATTTGAGCTCGAATCGTCTGAACGAAACCATTCCAGATGCAATTGGAGGAGCTGTGTCCCTAATTGAGCTGAAGCTGGATGGGAATTTTCTAGGGGGTGAAATTCCCTCTTCAATTGGTCACTGTTCTTCCCTTACAAATCTGTTCATGTCACAGAATAACTTAACTGGCCCGATACCAGCAGCATTAGCCAAACTCTCTTATCTACAAAATGTCGACTTATCCTTTAACAACCTCAATGGAACCCTTCCAAAGCAGTTGTCTAATCTTCCAAACCTTCATATGTTCAATATTTCTCACAACGACTTCAACAGTGAGCTGCCTACTGGTGGATTCTTTAACACCATCGCCCCTTCATCCGTTGCTGGCAATCCATCCCTTTGTGGCTCTGTTGTTAACAAGTCTTGCCCTTCCGTCCTTCCAAAACCTATTGTTCTTAATCCCAACTCCACTTCAGATTCCATTTCCAGCTCTCTGCCTCCAAGTAATAATCACAGAAGAAATAGAAATATCCTCAGCATTTCTGTGCTGATTGCCATTGGTGCCGCTGCTTTCATCATCATTGGTGTAATATCGATCACCATTCTCAACTTTCGAGTTCGATCACCCACGTCTTCTTCATCTGCAGCTGCACTTGCATTATCTATTGGGGATGATTTCAGTCATTCCTCCAGTCCTGATGCAAATTCTGGAAAGCTTGTGGTGTTATCAGGAGAACTTGACTTTAGCACAGGAGCACATGCCCTGCTGAACAAGGATTGTGAGCTTGGGCGTGGTGGATTTGGAGCAGTTTATCATACTGTTCTGCGGGATGGACACTCGGTTGCAATCAAGAAGCTTACGGTATCTAGCCTTGTTAAGTCGCAAGAGGATTTTGAGAGGGAAGTTAGGAAGTTTGGGATTGTCAGGCACCAAAATCTAGTGGCACTTGAAGGTTATTATTGGACTCCCTCGCTACAGCTCCTTATATACGAATTCGTCTCTGGAGGTAGCTTGTATAGGTTGCTCCACGAAGCATCAGACGACTATGTCCTGCCATGGAACGAGAGATTCGACATAATTCTTGGGACAGCGAAAGGTTTGGCTCACTTGCATCAATCAAACACAATCCACTATAACATAAAATCCAGCAACATTCTTATTGATTGTAATGGTCAACCTAAGGTTGGAGATTATGGTCTAGCTAGATTGCTGCCAATGTTAGACCGTTATGTTTTAAGTAGCAAGATCCAAAGTGCACTCGGTTACATGGCACCAGAGTTTGCTTGCAGGACAGTAAAGATTACCGAAAAATGCGATGTTTATGGCTTTGGAATATTGATTATAGAGGTGGTTACTGGGATGAGACCTGTCGAGTACATGGAGGACGACGTTGCAGTCCTCTGCGACATGGTCAGAGTAGCAGTGGAAGAAGGAAAAGCCGAAGAATGCATCGACAGCAAGCTGAGGGGGAATTTCCCTGTCGAAGAGGCCGTTCCCGTGTTAAAATTAGGCTTGATATGCACCTCCCATGTGCCATCAAACCGGCCGGACATGAGAGAAATGGTCAAAATATTGGAGATGATCAAATGCCCATCTGAATTACAAGAGGAGTTGGGATAA 2778 43.74 MRGLLKMKRLIELFVLFVLAPLCARCVNLPLNDDVLGLIVFKADVQDPKLKLATWNEDDDNPCNWTGVKCSPGSNRVVELNLNGFSLSGRLGRGLFQLEFLQRLSLAKNNLSGNINPNFSRVGNLQVIDLSGNNFSGTVPDEVFTQCGSLRVISLANNKFFGKIPDSLSFCGSLIAVNLSSNQFSGSLPSGIWSFSGLRSLDLSDNALVGEIPNVIENLYNLRTLNLSRNRFSGQIPDGIGNCLLLRSIDLSRNSFSGNLPQTMQRLVLCGNLILSRNLLEGDVPEWIGGMKSLETLDFSGNNFTGRIPSTMENLQYLKVLHLSSNGFTDSFPESVMKCQSLLAIDFSHNLITGNLPPTGSLAKLQFLNLSGNSFVGPIPETIGDLKSLSILDLSSNRLNETIPDAIGGAVSLIELKLDGNFLGGEIPSSIGHCSSLTNLFMSQNNLTGPIPAALAKLSYLQNVDLSFNNLNGTLPKQLSNLPNLHMFNISHNDFNSELPTGGFFNTIAPSSVAGNPSLCGSVVNKSCPSVLPKPIVLNPNSTSDSISSSLPPSNNHRRNRNILSISVLIAIGAAAFIIIGVISITILNFRVRSPTSSSSAAALALSIGDDFSHSSSPDANSGKLVVLSGELDFSTGAHALLNKDCELGRGGFGAVYHTVLRDGHSVAIKKLTVSSLVKSQEDFEREVRKFGIVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYRLLHEASDDYVLPWNERFDIILGTAKGLAHLHQSNTIHYNIKSSNILIDCNGQPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILIIEVVTGMRPVEYMEDDVAVLCDMVRVAVEEGKAEECIDSKLRGNFPVEEAVPVLKLGLICTSHVPSNRPDMREMVKILEMIKCPSELQEELG 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5753828 5758230 + CmoCh04G011270.1 Cmo04g01127 380102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01127 925 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 360 916 - -
Cmo04g01127 925 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 8 358 - -
Cmo04g01127 925 SMART LRR_typ_2 219 243 IPR003591 -
Cmo04g01127 925 SMART LRR_typ_2 482 506 IPR003591 -
Cmo04g01127 925 SMART LRR_typ_2 122 146 IPR003591 -
Cmo04g01127 925 SMART LRR_typ_2 195 218 IPR003591 -
Cmo04g01127 925 SMART LRR_typ_2 386 410 IPR003591 -
Cmo04g01127 925 SMART LRR_typ_2 291 315 IPR003591 -
Cmo04g01127 925 PRINTS Leucine-rich repeat signature 198 211 - -
Cmo04g01127 925 PRINTS Leucine-rich repeat signature 386 399 - -
Cmo04g01127 925 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Cmo04g01127 925 ProSitePatterns Protein kinases ATP-binding region signature. 648 671 IPR017441 GO:0005524
Cmo04g01127 925 Gene3D Ribonuclease Inhibitor 313 532 IPR032675 -
Cmo04g01127 925 Gene3D Ribonuclease Inhibitor 189 311 IPR032675 -
Cmo04g01127 925 Gene3D Ribonuclease Inhibitor 32 188 IPR032675 -
Cmo04g01127 925 Gene3D Transferase(Phosphotransferase) domain 1 719 923 - -
Cmo04g01127 925 ProSiteProfiles Protein kinase domain profile. 642 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01127 925 Gene3D Phosphorylase Kinase; domain 1 631 718 - -
Cmo04g01127 925 SUPERFAMILY L domain-like 32 266 - -
Cmo04g01127 925 SUPERFAMILY L domain-like 197 545 - -
Cmo04g01127 925 Pfam Leucine rich repeat 436 495 IPR001611 GO:0005515
Cmo04g01127 925 Pfam Leucine rich repeat 197 255 IPR001611 GO:0005515
Cmo04g01127 925 Pfam Leucine rich repeat 124 184 IPR001611 GO:0005515
Cmo04g01127 925 Pfam Leucine rich repeat 272 327 IPR001611 GO:0005515
Cmo04g01127 925 Pfam Leucine rich repeat 364 421 IPR001611 GO:0005515
Cmo04g01127 925 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 360 916 - -
Cmo04g01127 925 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 358 - -
Cmo04g01127 925 SUPERFAMILY Protein kinase-like (PK-like) 646 912 IPR011009 -
Cmo04g01127 925 Pfam Protein tyrosine and serine/threonine kinase 644 910 IPR001245 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01127 Cmo15g00181 CCT
Cmo04g01127 Cmo04g00101 ECH
Cmo04g01127 Cmo15g00181 ECH
Cmo04g00101 Cmo04g01127 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01127 Cmo-Chr4:5753828 Cmo14g00008 Cmo-Chr14:49629 0 dispersed
Cmo15g00181 Cmo-Chr15:831929 Cmo04g01127 Cmo-Chr4:5753828 0 wgd
Cmo04g00101 Cmo-Chr4:537599 Cmo04g01127 Cmo-Chr4:5753828 0 wgd
Cmo04g01127 Cmo-Chr4:5753828 Cmo06g00177 Cmo-Chr6:968492 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74266 PF07714 PK_Tyr_Ser-Thr 3.40E-39 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01127 - - csv:101217762 1573.91