Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01130 ATGGAATTCCTCAATTCCTCTAATCAAATGGCTTCCTCTTCCAATCCCACCGCCCCTGTTCGCGGTTCCTTCCACCGTCGAGCGCATTCCGAGGTCCATTTCCGGATTCCCGACGATCTCGATCTCGTCTCGGACCCTTTCGATGGGCCTTCTTCTGGATTCGGAGATCTGGGCTTCGACGACGATCTCTTATGCACCTTAATGGACAGCGATAAGATCGGATCCAAAATCGACAATGGGTCTTCGTCTTCGTCCAATCCTGAAGCGCCTGGTGGTGCTGCGGCGGAGAATGTCGAAGGGGAGAAAATCTCCCGTCCCAAGCACCGCCATAGCAATTCTGCTGATGGGTCTTGCATTATGGAGTCTATTGAGGCTAAGAAGGCCATGGATCCTGATAAGCTTGCTGAGTTGTGGACAATTGATCCTAAGCGTGCCAAGAGGATTTTAGCGAACAGACAGTCTGCTGCTCGGTCAAAAGAGAGGAAAGCTCGCTACATAATCGAACTTGAGAGAAAAGTTCAAAGGCTCAAGACCGAAGCAACAACTCTTTCTGCACAGCTCACATTGTACCAGAGAGATACGAACGAGCTTTCAACCGAAAACTCTGAGCTCAAACTTCATTTACAAGCTATGGAACAGCAAGCACGTTTACGCGACGCTCTAAATGAAGCTTTGAAAAAGGAATTCGAACGGTTCAAGATCGCGACCGGAGAAGTAATAACACCTACAGATTCGTATAACTTCGGTATGCCTCAAGTTTCATTTCCCCAATCTTGCTTTTCACACCAACCACAACCTGGGCAACACGACCTGCCCCAAATTCATCCGTTCCATTCGAGTCTACCGTATCCGAATCAGGCTCTGTTTGTTGCATCCCATCAGCCACATGCCTTGATACAAATTCTTCAACAGGATCCTATTAGCCGATTGCAGGGTCTCGATATCGATATCGATAGCAGAGGCACGGAAATAAAGCCAGAAGGCTCCTCCATATCCGTCAGTGAAAGTAGCAGCACATTTTAA 1023 48.19 MEFLNSSNQMASSSNPTAPVRGSFHRRAHSEVHFRIPDDLDLVSDPFDGPSSGFGDLGFDDDLLCTLMDSDKIGSKIDNGSSSSSNPEAPGGAAAENVEGEKISRPKHRHSNSADGSCIMESIEAKKAMDPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIIELERKVQRLKTEATTLSAQLTLYQRDTNELSTENSELKLHLQAMEQQARLRDALNEALKKEFERFKIATGEVITPTDSYNFGMPQVSFPQSCFSHQPQPGQHDLPQIHPFHSSLPYPNQALFVASHQPHALIQILQQDPISRLQGLDIDIDSRGTEIKPEGSSISVSESSSTF 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5771503 5775162 + CmoCh04G011300.1 Cmo04g01130 380105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01130 340 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 8 337 - -
Cmo04g01130 340 MobiDBLite consensus disorder prediction 320 340 - -
Cmo04g01130 340 MobiDBLite consensus disorder prediction 1 20 - -
Cmo04g01130 340 Coils Coil 159 214 - -
Cmo04g01130 340 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 141 204 IPR004827 GO:0003700|GO:0006355
Cmo04g01130 340 MobiDBLite consensus disorder prediction 100 114 - -
Cmo04g01130 340 CDD bZIP_plant_RF2 144 193 IPR044759 GO:0003700|GO:0006355
Cmo04g01130 340 Gene3D - 142 195 - -
Cmo04g01130 340 Pfam bZIP transcription factor 143 201 IPR004827 GO:0003700|GO:0006355
Cmo04g01130 340 SUPERFAMILY Leucine zipper domain 143 194 IPR046347 GO:0003700|GO:0006355
Cmo04g01130 340 SMART brlzneu 139 203 IPR004827 GO:0003700|GO:0006355
Cmo04g01130 340 MobiDBLite consensus disorder prediction 1 24 - -
Cmo04g01130 340 MobiDBLite consensus disorder prediction 75 116 - -
Cmo04g01130 340 MobiDBLite consensus disorder prediction 325 340 - -
Cmo04g01130 340 PANTHER BZIP TRANSCRIPTION FACTOR 18 8 337 - -
Cmo04g01130 340 MobiDBLite consensus disorder prediction 75 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01130 Cmo-Chr4:5771503 Cmo20g00333 Cmo-Chr20:1631748 2.21E-105 dispersed
Cmo04g00103 Cmo-Chr4:550396 Cmo04g01130 Cmo-Chr4:5771503 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9594 PF00170 bZIP_1 1.20E-07 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01130 - - csv:101209388 482.256