Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01132 ATGGCCTTTTACTCGCCATTTTCCCTCCTTCCTCTCTTCTTCCTCTTCCTCCGCTCCACCGTTGCCGACTACGGCGGCTGGCAGAGCGGCCATGCCACCTTTTACGGTGGCGGTGACGCGTCTGGTACTATGGGTGGAGCTTGTGGGTATGGGAACTTGTACAGCCAAGGGTATGGCACCAACACGGTGGCGCTAAGCACCGCGCTGTTCAACAACGGCCTCAGCTGTGGGGCTTGCTTCGAAATGACTTGCACAAATGATCCCAAATGGTGCCTGCCCGGAACCATTAGGGTCACCGCCACCAACTTCTGCCCCCCCAACTTTGCCCTCCCCAACAACAACGGCGGCTGGTGCAACCCTCCTCTCCAGCACTTCGACATGGCTGAGCCTGCCTTCCTTCAGATCGCTCAATACCGCGCCGGAATTGTCCCCGTCTCCTTTCGGAGAGTGCCATGCATGAAGAAAGGTGGGGTGAGGTTCACAATTAACGGTCACTCCTACTTCAACCTTGTTTTGATCACGAACGTGGGTGGTGCTGGCGACGTCCACGCCGTGTCGATAAAGGGGTCTCGAACTGGATGGCAAGCGATGTCTAGAAATTGGGGCCAAAACTGGCAAAGCAACAACTACCTCAATGGTCAAGGCCTCTCCTTTCAGGTCACCCTCAGCGATGGCCGCACTCTCACAGCCTATAATCTCGTCCCGTCCAATTGGCAGTTCGGTCGGACCTATGAAGGCCCTCAATTTTAA 750 56.0 MAFYSPFSLLPLFFLFLRSTVADYGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTVALSTALFNNGLSCGACFEMTCTNDPKWCLPGTIRVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGVRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNNYLNGQGLSFQVTLSDGRTLTAYNLVPSNWQFGRTYEGPQF 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5778098 5779940 + CmoCh04G011320.1 Cmo04g01132 380107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01132 249 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Cmo04g01132 249 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Cmo04g01132 249 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Cmo04g01132 249 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Cmo04g01132 249 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Cmo04g01132 249 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Cmo04g01132 249 PANTHER EXPANSIN-A15 9 249 IPR002963 GO:0009664
Cmo04g01132 249 SMART dpbb_1 62 147 IPR007112 -
Cmo04g01132 249 Pfam Expansin C-terminal domain 158 235 IPR007117 -
Cmo04g01132 249 Gene3D - 157 249 IPR036749 -
Cmo04g01132 249 SUPERFAMILY PHL pollen allergen 154 246 IPR036749 -
Cmo04g01132 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
Cmo04g01132 249 SUPERFAMILY Barwin-like endoglucanases 13 175 IPR036908 -
Cmo04g01132 249 Gene3D - 16 153 IPR036908 -
Cmo04g01132 249 Pfam Lytic transglycolase 62 147 IPR009009 -
Cmo04g01132 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 157 IPR007112 -
Cmo04g01132 249 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Cmo04g01132 249 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Cmo04g01132 249 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Cmo04g01132 249 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Cmo04g01132 249 PRINTS Expansin signature 132 145 IPR002963 GO:0009664
Cmo04g01132 249 PRINTS Expansin signature 156 168 IPR002963 GO:0009664
Cmo04g01132 249 PRINTS Expansin signature 168 189 IPR002963 GO:0009664
Cmo04g01132 249 PRINTS Expansin signature 203 224 IPR002963 GO:0009664
Cmo04g01132 249 PRINTS Expansin signature 232 248 IPR002963 GO:0009664
Cmo04g01132 249 PANTHER EXPANSIN 9 249 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01132 Cmo-Chr4:5778098 Cmo04g01748 Cmo-Chr4:8826880 5.16E-142 dispersed
Cmo15g00274 Cmo-Chr15:1315251 Cmo04g01132 Cmo-Chr4:5778098 2.79E-122 dispersed
Cmo15g00178 Cmo-Chr15:811890 Cmo04g01132 Cmo-Chr4:5778098 5.10E-151 wgd
Cmo04g00104 Cmo-Chr4:556235 Cmo04g01132 Cmo-Chr4:5778098 1.18E-90 wgd
Cmo04g01132 Cmo-Chr4:5778098 Cmo04g02994 Cmo-Chr4:21096692 2.62E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01132 - K20628 csv:101209633 494.582