Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01134 ATGGCAATGTCGAATGGATCGGGCAGTGGAGTGGTTCGCTTCAAAGTATCTCCCTCAACCGCCTGCGTTATTCAGAAGGGTGACATCACAAAGTGGTTCATCGATGGTTCTTCTGATGCCATTGTCGAAATGGGTAGATGCTGTAGGAATTGCTTCCCCATTGCTATGCTTCGCGACCTGGAGGTTAATCCAGCTAATGAAGTAATGCTTGGAGGTGGTGGTGCTGATGGAGCGATACATAATGCTGCTGGACCTGATCTCGTGCAAGCATGTTATTCTGTCCAAGAAGTCCAACCTGGAATCCGCTGTCCAACTGGAGAAGCAAGGATTACTCCATATCCTTTTGATGAAGCTGCCACAATAGCCTTATCAACCGTTAAAGAGTTTTCCAATGGCTTGAAAGAGACTTTCAAGCGCAGGAACGGTGGACGTAACAAGCACGGCCGTGGACACGTTAAGTTCATCAGGTGCTCCAACTGCGGCAAATGCTGCCCCAAGGACAAGGCTATTAAGAGGTTTCTCGTGAGGAATATTGTGGAGCAGGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTCTATGACCAATACACTCTTCCTAAGCTTTATGCTAAGATGCAGTACTGTGTTTCCTGTGCCATTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGTTTCATCAGACGCAGGGATGATCAGCCAAAGCCTGGCCAGCCAGGTCAAGCACCTCGTCCTGCTGGAGCTGGAATTCCTGCTCATGGAATAGTTGGAACCATTTTGGCTGCAGTATAG 819 48.6 MAMSNGSGSGVVRFKVSPSTACVIQKGDITKWFIDGSSDAIVEMGRCCRNCFPIAMLRDLEVNPANEVMLGGGGADGAIHNAAGPDLVQACYSVQEVQPGIRCPTGEARITPYPFDEAATIALSTVKEFSNGLKETFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRPAGAGIPAHGIVGTILAAV 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5780497 5787220 + CmoCh04G011340.1 Cmo04g01134 380109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01134 272 ProSitePatterns Ribosomal protein S26e signature. 207 214 IPR000892 GO:0003735|GO:0005840|GO:0006412
Cmo04g01134 272 Gene3D Ribosomal protein S26e 135 248 IPR038551 -
Cmo04g01134 272 MobiDBLite consensus disorder prediction 224 244 - -
Cmo04g01134 272 PANTHER 40S RIBOSOMAL PROTEIN S26 136 258 IPR000892 GO:0003735|GO:0005840|GO:0006412
Cmo04g01134 272 MobiDBLite consensus disorder prediction 221 260 - -
Cmo04g01134 272 Gene3D Leucine Aminopeptidase, subunit E, domain 1 9 112 IPR043472 -
Cmo04g01134 272 SUPERFAMILY Macro domain-like 62 132 IPR043472 -
Cmo04g01134 272 Pfam Ribosomal protein S26e 136 240 IPR000892 GO:0003735|GO:0005840|GO:0006412
Cmo04g01134 272 Pfam Macro domain 62 112 IPR002589 -
Cmo04g01134 272 PANTHER 40S RIBOSOMAL PROTEIN S26 136 258 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01134 Cmo15g00176 CCT
Cmo04g01134 Cmo04g02996 CCT
Cmo04g01134 Cmo15g00176 ECH
Cmo04g01134 Cmo04g02996 ECH
Cmo04g02996 Cmo04g01134 ECH
Cmo04g01134 Cmo04g00104 ECH
Cmo04g00104 Cmo04g01134 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00176 Cmo-Chr15:805944 Cmo04g01134 Cmo-Chr4:5780497 4.90E-81 wgd
Cmo04g01134 Cmo-Chr4:5780497 Cmo04g02996 Cmo-Chr4:21102628 2.12E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01134 K02976 - csv:101210535 205.682