Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01140 ATGTCCAAAGAAAGAGAGAGATTCGACGAGATAGCGAAGAAGATAAAGAGAGAAACCGATGTATCATCAAATATTCCTCCACAACAAATCATGGGGAGACGCCATTCCTTGCAGGCTTCTCCAGGGATACTCAACACCATTACTCCATGTGCAGCCTGCAAGCTCTTAAGAAGAAGATGTGCTCAAGAATGCCCCTTTTCCCCCTACTTCTCGCCTCACGAGCCTCATAAATTCGCCTCGGTTCACAAGGTTTTTGGTGCTAGTAATGTCTCGAAGATGCTCATGGAAGTTTCTGAGAATCGGAGAGCGGATGCTGCGAACAGCTTAGTTTATGAAGCGAATGTGAGGCTTCGAGATCCTGTTTATGGGTGCATGGGTGCCATTTCGTCCTTACAACACCAAATCCAAGCCTTACAAATTGAGTTAAACACGGTGAGAGCTGAGATCTTAAGACACAAATTTAGAGAAGCTAGTAATATGATTCACTCTTCTCCTCAACCACAACAACAACAACATGCGTCTTTTCTTTCATCTTCGGCCGAGGTTGTTTCGGTTGCCGTTCCACCACCGCCACCGTCTCTACCACTACCTCCGCCATCTCATCACGACGCTTCTTCCTCTTCCTCCCCTTTGTACAACCGTCCCACAGTGGCAACGGATTATAATACCATTTCAAGCAACGAGAATGTTACCTACTTTGTTAGTACTACAAGTACGGATCATCAATTGAATTCTTAG 738 45.39 MSKERERFDEIAKKIKRETDVSSNIPPQQIMGRRHSLQASPGILNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENRRADAANSLVYEANVRLRDPVYGCMGAISSLQHQIQALQIELNTVRAEILRHKFREASNMIHSSPQPQQQQHASFLSSSAEVVSVAVPPPPPSLPLPPPSHHDASSSSSPLYNRPTVATDYNTISSNENVTYFVSTTSTDHQLNS 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5821060 5822329 - CmoCh04G011400.1 Cmo04g01140 380115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01140 245 PANTHER LOB DOMAIN PROTEIN 34 233 - -
Cmo04g01140 245 MobiDBLite consensus disorder prediction 200 214 - -
Cmo04g01140 245 ProSiteProfiles LOB domain profile. 48 149 IPR004883 -
Cmo04g01140 245 Coils Coil 128 148 - -
Cmo04g01140 245 MobiDBLite consensus disorder prediction 185 199 - -
Cmo04g01140 245 Pfam Lateral organ boundaries (LOB) domain 49 146 IPR004883 -
Cmo04g01140 245 MobiDBLite consensus disorder prediction 180 214 - -
Cmo04g01140 245 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 34 233 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01140 Cmo15g00170 CCT
Cmo04g01140 Cmo15g00170 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01140 Cmo-Chr4:5821060 Cmo02g00726 Cmo-Chr2:4587924 1.90E-47 dispersed
Cmo15g00170 Cmo-Chr15:784533 Cmo04g01140 Cmo-Chr4:5821060 9.67E-78 wgd
Cmo04g00110 Cmo-Chr4:579883 Cmo04g01140 Cmo-Chr4:5821060 5.51E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9595 PF03195 LOB 1.40E-39 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01140 - - csv:101219425 369.007