Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01142 ATGTCGTGCATTCACAACACCCCATTACCTTGTTTCTCTGCTTCCTCTTCTTCTTTCCCCAGAAGAAATCGATGCGCTTCTTTTAAGTCTCGAATCCACTGTACTCTTGGAGGAACTGTAGCAGAACCAAAATCTACCACTTCTGCAGAACCGTTGTTGCTTAATGCTGTTCGTGGTGAGGATGTCGAAAGACCTCCAGTTTGGTTGATGAGGCAAGCAGGGAGAAAAGACTATCTTTTGCACTCTGCGGTGGATTTGGTGGGATTTGCAGCCCATAAGCCGGATAGTTATAGTACTCATAAAGTGAGTTACCAAGTCATTTGTGAAAAATACCCTTCATTTCGTCAAAGGTCCGAAAATACGGATCTTGTTGTGGAAATTTCGCTTCAGCCTTGGAAAGTCTTTAAACCTGATGGGGTGATCTTATTCTCAGACATTCTCACTCCGCTATCCGGGATGAATATTCCCTTCGACATCGTCAAAGGTAAGGGTCCGATCATTGCTAACCCTATAAGCGAAGCTTCTCAAGTGAATGAAGTGAGGGAGTTTGTCCCTGAAGAGAATGTTCCATATGTTGGGGAAGCTTTAACGATTCTGCGAAAAGAGGTTGACAACAAAGCAGCAGTTCTTGGTTTCGTTGGGGCTCCTTTCACCCTTGCATCATACGTGGTCGAAGGTGGTTCGTCGAAGCACTTTTCAAAAATAAAAAGGCTCGCTTTCTCTCAGCCAAAGGTTCTTCATGCATTGCTCCAGAAGTTTACAAGCTCAATGGCTAGGTACGTTCAATACCAAGCAGACAACGGAGCGCAAGCCGTTCAAATCTTCGATTCGTGGGCGACAGAGCTCAGCCCCGTGGACTTCGAAGAATTCAGTCTCCCATACTTGAAGCAGATTGTGGACTCTGTGAAGAAAACACATCCAGACCTTCCACTGATTCTGTATGCCAGTGGGTCTGGAGGCTTACTTGAAAGGCTGGCTTCAACTGGTGTCGACGTAGTTAGCTTAGATTGGACGGTCGACATGGCTGAAGGTAGGAGGCGATTAGGAGCAGACATAGCAGTACAGGGTAATGTCGACCCTGGCGTTCTCTTCGGGTCCAAGGAGTTCATCACCCAAAGGATAAATGATACTGTGAAGAAGGCAGGTAAAGGGAAGCACATATTGAATCTAGGCCATGGCATTGTTGTGGGTACACCTGAGGAAAGTGTAGCTCATTTCTTTGAGGTTGCTAAAGGAATTAGGTCGGCGGATTTGCTCCTCAAAACCCACCAGATTTCTAGATTCTACACAATTTTGATTACTTCGATCGTTAACGAGAGGGAAGAAAAAAGGGAAAGAATCAGTGCATCTCATAAGAAAATGGGAGCTTCTAGCCTCGCTTGTTTTTCATCGCTATTTGCAGTTTTTCCATCTCATAATAATGCGCACAACAAATCCTTACCATTTTGTTCAAATCCCTCAAAACCCCTCTTCCGATTGAACAAGATCCGCTGCGGACTGCCTGAGAGTGGAATTCGGCAAAACCCCTCAAGTTCCAGAGCTTCCTCTTCCAAGAACAGGATGGAGGAGTACAATTTGGCTATGAAGAAGATGATGAGGAATCCATATGAGTATCACCATGAACTCGGTATGAACTATACTGTGATAGCTGACAATTTGATCGTCGGTTCCCAGCCTCAGAAACCGGAAGATATCGATTTCCTGAAGGAGGAAGAAGGTGTTGCCTATATTCTAAATTTACAGCAGGATAAGGATGTCGAGTACTGGGGAATCGACTTACAGTCGGTTATAGAAAGATGTAAAGAACTTGGAATTCATCATATGAGGCAACCGGCAAAGGATTTCGATCCAGACTCCCTGAGAAATGGATTGCCCAAAGCTGTTTCCTTGTTAGAATGGGCGATTTCGGAGGGTAAAGGAAAAGCTTACGTGCATTGCACCGCTGGATTAGGCAGGGCCCCTGCCGTTGCAATAGCATACCTGTACTGGTTTTGTGGAATGAATGCAAGTTCTCTTCTACTTAGAAACTTAACATATGAAGCACTGACTTCAAAAAGACCTTGTGGACCAAGTAAAAAAGCCATCCGTGGAGCCACATACGATCTATCGAAAAATGATCCAGGGAAGGAGCCATTCGAGAGCCTTCCAGATAACGCATTCGAGGATATCGCAGATTGGGAGAGGAACTTGATTCAGGATCGGGTGCGTGCAATACGTGCAGGTTCAACGTCATTCGGTTTTTACCAGGATGATGATATAGAATGA 2265 45.08 MSCIHNTPLPCFSASSSSFPRRNRCASFKSRIHCTLGGTVAEPKSTTSAEPLLLNAVRGEDVERPPVWLMRQAGRKDYLLHSAVDLVGFAAHKPDSYSTHKVSYQVICEKYPSFRQRSENTDLVVEISLQPWKVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPIIANPISEASQVNEVREFVPEENVPYVGEALTILRKEVDNKAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLQKFTSSMARYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKKTHPDLPLILYASGSGGLLERLASTGVDVVSLDWTVDMAEGRRRLGADIAVQGNVDPGVLFGSKEFITQRINDTVKKAGKGKHILNLGHGIVVGTPEESVAHFFEVAKGIRSADLLLKTHQISRFYTILITSIVNEREEKRERISASHKKMGASSLACFSSLFAVFPSHNNAHNKSLPFCSNPSKPLFRLNKIRCGLPESGIRQNPSSSRASSSKNRMEEYNLAMKKMMRNPYEYHHELGMNYTVIADNLIVGSQPQKPEDIDFLKEEEGVAYILNLQQDKDVEYWGIDLQSVIERCKELGIHHMRQPAKDFDPDSLRNGLPKAVSLLEWAISEGKGKAYVHCTAGLGRAPAVAIAYLYWFCGMNASSLLLRNLTYEALTSKRPCGPSKKAIRGATYDLSKNDPGKEPFESLPDNAFEDIADWERNLIQDRVRAIRAGSTSFGFYQDDDIE 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5828214 5834441 + CmoCh04G011420.1 Cmo04g01142 380117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01142 754 ProSiteProfiles Dual specificity protein phosphatase domain profile. 545 708 IPR020422 GO:0006470|GO:0008138
Cmo04g01142 754 TIGRFAM hemE: uroporphyrinogen decarboxylase 103 411 IPR006361 GO:0004853|GO:0006779
Cmo04g01142 754 CDD DSP_laforin-like 544 697 IPR045204 GO:0019203|GO:0046838
Cmo04g01142 754 CDD URO-D 54 411 IPR006361 GO:0004853|GO:0006779
Cmo04g01142 754 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 538 672 IPR029021 -
Cmo04g01142 754 Gene3D Protein tyrosine phosphatase superfamily 528 741 IPR029021 -
Cmo04g01142 754 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 622 687 IPR000387 GO:0016311|GO:0016791
Cmo04g01142 754 Pfam Uroporphyrinogen decarboxylase (URO-D) 52 75 IPR000257 GO:0004853|GO:0006779
Cmo04g01142 754 Pfam Uroporphyrinogen decarboxylase (URO-D) 111 411 IPR000257 GO:0004853|GO:0006779
Cmo04g01142 754 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 2, CHLOROPLASTIC 25 414 - -
Cmo04g01142 754 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 66 75 IPR000257 GO:0004853|GO:0006779
Cmo04g01142 754 SUPERFAMILY UROD/MetE-like 52 414 IPR038071 -
Cmo04g01142 754 Coils Coil 514 534 - -
Cmo04g01142 754 Gene3D - 39 414 IPR038071 -
Cmo04g01142 754 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 25 414 - -
Cmo04g01142 754 Hamap Uroporphyrinogen decarboxylase [hemE]. 50 414 IPR006361 GO:0004853|GO:0006779
Cmo04g01142 754 Pfam Dual specificity phosphatase, catalytic domain 568 669 IPR000340 GO:0008138|GO:0016311
Cmo04g01142 754 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 210 226 IPR000257 GO:0004853|GO:0006779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01142 K01599 hemE, UROD; uroporphyrinogen decarboxylase [EC:4.1.1.37] - csv:101212245 726.857
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01142 Cmo-Chr4:5828214 Cmo16g00476 Cmo-Chr16:2275976 2.39E-129 dispersed
Cmo04g00112 Cmo-Chr4:586830 Cmo04g01142 Cmo-Chr4:5828214 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo11g01384 CCT 494 1100 Protein tyrosine phosphatase (PTP) family AT3G50110 56.4 9.7e-181 630.9
Cmo07g00697 . 33 652 Protein tyrosine phosphatase (PTP) family AT3G50110 55.9 4.5e-178 622.1
Cmo19g00605 . 618 1120 Protein tyrosine phosphatase (PTP) family AT3G50110 53.8 1.6e-151 533.9
Cmo11g01191 . 1 415 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.1e-156 550.4
Cmo14g00573 . 1 391 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.7e-149 526.6
Cmo15g00495 . 1 848 Protein tyrosine phosphatase (PTP) family AT3G10550 66.2 0.0e+00 1120.9
Cmo15g00495 . 1 848 Protein tyrosine phosphatase (PTP) family AT5G04540 62.7 2.5e-309 1058.5
Cmo10g00505 . 1 1204 Protein tyrosine phosphatase (PTP) family AT5G58160 54.0 0.0e+00 1100.9
Cmo11g00464 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 0.0e+00 1086.2
Cmo01g01711 CST 1 1368 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 5.5e-300 1028.1
Cmo09g00417 CST 57 1373 Protein tyrosine phosphatase (PTP) family AT5G58160 51.3 2.3e-298 1022.7
Cmo11g00189 . 1 380 Protein tyrosine phosphatase (PTP) family AT5G58160 61.3 3.6e-134 477.2
Cmo11g00187 CST 1 295 Protein tyrosine phosphatase (PTP) family AT5G58160 68.5 1.4e-109 395.6
Cmo19g00208 . 1030 1198 Protein tyrosine phosphatase (PTP) family AT5G58160 53.5 4.8e-38 157.9
Cmo09g01160 . 80 367 Protein tyrosine phosphatase (PTP) family AT1G71860 61.9 3.1e-109 392.5
Cmo10g00017 . 14 662 Protein tyrosine phosphatase (PTP) family AT5G23720 64.9 1.1e-230 797.3
Cmo10g00018 . 8 235 Protein tyrosine phosphatase (PTP) family AT5G23720 56.1 2.9e-56 218.0
Cmo08g01140 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 54.3 2.0e-40 162.9
Cmo19g01082 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 6.8e-71 264.2
Cmo11g02021 . 1 214 Protein tyrosine phosphatase (PTP) family AT2G04550 61.3 2.1e-64 242.7
Cmo18g00927 . 183 463 Protein tyrosine phosphatase (PTP) family AT3G52180 67.6 1.1e-110 397.1
Cmo04g01478 . 100 360 Protein tyrosine phosphatase (PTP) family AT3G52180 66.5 8.7e-105 377.5
Cmo04g01142 . 507 740 Protein tyrosine phosphatase (PTP) family AT3G10940 74.0 4.3e-104 375.2
Cmo11g01690 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 71.7 1.6e-201 699.5
Cmo20g00254 CST 43 207 Protein tyrosine phosphatase (PTP) family AT2G32960 66.0 1.2e-71 267.3
Cmo11g02016 . 45 211 Protein tyrosine phosphatase (PTP) family AT2G32960 62.4 1.3e-67 253.8
Cmo19g01077 . 45 206 Protein tyrosine phosphatase (PTP) family AT2G32960 63.5 2.9e-67 252.7
Cmo11g00963 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 50.5 7.0e-53 204.9
Cmo06g00821 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 55.6 3.4e-100 362.5
Cmo16g01171 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 53.8 5.1e-96 348.6
Cmo12g01314 CST 12 229 Protein tyrosine phosphatase (PTP) family AT2G35680 61.0 2.2e-78 290.0
Cmo05g01381 CST 22 229 Protein tyrosine phosphatase (PTP) family AT2G35680 61.5 4.8e-78 288.9
Cmo05g01381 CST 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.6e-46 183.3
Cmo16g01171 . 37 212 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 2.5e-44 176.0
Cmo06g00821 . 37 209 Protein tyrosine phosphatase (PTP) family AT5G56610 50.9 9.7e-44 174.1
Cmo20g00254 CST 40 208 Protein tyrosine phosphatase (PTP) family AT4G03960 76.9 2.7e-76 282.3
Cmo11g02016 . 42 211 Protein tyrosine phosphatase (PTP) family AT4G03960 71.8 3.4e-71 265.4
Cmo19g01077 . 42 206 Protein tyrosine phosphatase (PTP) family AT4G03960 73.9 3.7e-70 261.9
Cmo11g00963 . 5 170 Protein tyrosine phosphatase (PTP) family AT4G03960 58.4 1.1e-56 217.2
Cmo10g00860 . 15 170 Protein tyrosine phosphatase (PTP) family AT4G03960 60.3 4.4e-55 211.8
Cmo11g00963 . 1 197 Protein tyrosine phosphatase (PTP) family AT3G02800 72.2 5.7e-82 301.2
Cmo10g00860 . 1 196 Protein tyrosine phosphatase (PTP) family AT3G02800 68.9 1.1e-77 287.0
Cmo20g00254 CST 37 198 Protein tyrosine phosphatase (PTP) family AT3G02800 61.7 2.7e-55 212.6
Cmo19g01077 . 40 200 Protein tyrosine phosphatase (PTP) family AT3G02800 58.4 2.9e-54 209.1
Cmo11g02016 . 40 200 Protein tyrosine phosphatase (PTP) family AT3G02800 56.5 7.2e-53 204.5
Cmo04g01282 CST 1 186 Protein tyrosine phosphatase (PTP) family AT3G55270 65.8 1.5e-61 235.3
Cmo04g00237 CST 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 62.8 2.0e-58 224.9
Cmo11g01191 . 1 415 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.1e-156 550.4
Cmo14g00573 . 1 391 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.7e-149 526.6
Cmo11g01384 CCT 496 1100 Protein tyrosine phosphatase (PTP) family AT3G19420 63.5 1.5e-218 756.5
Cmo07g00697 . 23 652 Protein tyrosine phosphatase (PTP) family AT3G19420 57.6 5.3e-192 668.3
Cmo19g00605 . 616 1121 Protein tyrosine phosphatase (PTP) family AT3G19420 59.2 6.3e-177 618.2
Cmo11g01384 CCT 494 1100 Protein tyrosine phosphatase (PTP) family AT3G50110 56.4 9.7e-181 630.9
Cmo07g00697 . 33 652 Protein tyrosine phosphatase (PTP) family AT3G50110 55.9 4.5e-178 622.1
Cmo19g00605 . 618 1120 Protein tyrosine phosphatase (PTP) family AT3G50110 53.8 1.6e-151 533.9
Cmo10g00505 . 1 1204 Protein tyrosine phosphatase (PTP) family AT5G58160 54.0 0.0e+00 1100.9
Cmo11g00464 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 0.0e+00 1086.2
Cmo01g01711 CST 1 1368 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 5.5e-300 1028.1
Cmo09g00417 CST 57 1373 Protein tyrosine phosphatase (PTP) family AT5G58160 51.3 2.3e-298 1022.7
Cmo11g00189 . 1 380 Protein tyrosine phosphatase (PTP) family AT5G58160 61.3 3.6e-134 477.2
Cmo11g00187 CST 1 295 Protein tyrosine phosphatase (PTP) family AT5G58160 68.5 1.4e-109 395.6
Cmo19g00208 . 1030 1198 Protein tyrosine phosphatase (PTP) family AT5G58160 53.5 4.8e-38 157.9
Cmo15g00495 . 1 848 Protein tyrosine phosphatase (PTP) family AT3G10550 66.2 0.0e+00 1120.9
Cmo15g00495 . 1 848 Protein tyrosine phosphatase (PTP) family AT5G04540 62.7 2.5e-309 1058.5
Cmo02g01379 . 21 281 Protein tyrosine phosphatase (PTP) family AT3G44620 50.2 9.6e-66 247.7
Cmo16g01199 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 63.3 4.0e-111 398.7
Cmo03g00384 . 1 669 Protein tyrosine phosphatase (PTP) family AT3G09100 68.6 5.2e-273 937.6
Cmo07g01089 CST 1 515 Protein tyrosine phosphatase (PTP) family AT3G09100 52.4 2.5e-182 636.3
Cmo03g00384 . 1 669 Protein tyrosine phosphatase (PTP) family AT5G01290 66.1 3.4e-253 871.7
Cmo07g01089 CST 5 515 Protein tyrosine phosphatase (PTP) family AT5G01290 51.1 9.2e-174 607.8
Cmo03g00384 . 82 669 Protein tyrosine phosphatase (PTP) family AT5G28210 56.8 1.2e-183 640.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006238 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01142 Cmo_Chr04 FPKM 0.663641 0.0 0.0 0.0 0.0 0.825798 0.0 0.0 0.0 0.0