Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g01142 | ATGTCGTGCATTCACAACACCCCATTACCTTGTTTCTCTGCTTCCTCTTCTTCTTTCCCCAGAAGAAATCGATGCGCTTCTTTTAAGTCTCGAATCCACTGTACTCTTGGAGGAACTGTAGCAGAACCAAAATCTACCACTTCTGCAGAACCGTTGTTGCTTAATGCTGTTCGTGGTGAGGATGTCGAAAGACCTCCAGTTTGGTTGATGAGGCAAGCAGGGAGAAAAGACTATCTTTTGCACTCTGCGGTGGATTTGGTGGGATTTGCAGCCCATAAGCCGGATAGTTATAGTACTCATAAAGTGAGTTACCAAGTCATTTGTGAAAAATACCCTTCATTTCGTCAAAGGTCCGAAAATACGGATCTTGTTGTGGAAATTTCGCTTCAGCCTTGGAAAGTCTTTAAACCTGATGGGGTGATCTTATTCTCAGACATTCTCACTCCGCTATCCGGGATGAATATTCCCTTCGACATCGTCAAAGGTAAGGGTCCGATCATTGCTAACCCTATAAGCGAAGCTTCTCAAGTGAATGAAGTGAGGGAGTTTGTCCCTGAAGAGAATGTTCCATATGTTGGGGAAGCTTTAACGATTCTGCGAAAAGAGGTTGACAACAAAGCAGCAGTTCTTGGTTTCGTTGGGGCTCCTTTCACCCTTGCATCATACGTGGTCGAAGGTGGTTCGTCGAAGCACTTTTCAAAAATAAAAAGGCTCGCTTTCTCTCAGCCAAAGGTTCTTCATGCATTGCTCCAGAAGTTTACAAGCTCAATGGCTAGGTACGTTCAATACCAAGCAGACAACGGAGCGCAAGCCGTTCAAATCTTCGATTCGTGGGCGACAGAGCTCAGCCCCGTGGACTTCGAAGAATTCAGTCTCCCATACTTGAAGCAGATTGTGGACTCTGTGAAGAAAACACATCCAGACCTTCCACTGATTCTGTATGCCAGTGGGTCTGGAGGCTTACTTGAAAGGCTGGCTTCAACTGGTGTCGACGTAGTTAGCTTAGATTGGACGGTCGACATGGCTGAAGGTAGGAGGCGATTAGGAGCAGACATAGCAGTACAGGGTAATGTCGACCCTGGCGTTCTCTTCGGGTCCAAGGAGTTCATCACCCAAAGGATAAATGATACTGTGAAGAAGGCAGGTAAAGGGAAGCACATATTGAATCTAGGCCATGGCATTGTTGTGGGTACACCTGAGGAAAGTGTAGCTCATTTCTTTGAGGTTGCTAAAGGAATTAGGTCGGCGGATTTGCTCCTCAAAACCCACCAGATTTCTAGATTCTACACAATTTTGATTACTTCGATCGTTAACGAGAGGGAAGAAAAAAGGGAAAGAATCAGTGCATCTCATAAGAAAATGGGAGCTTCTAGCCTCGCTTGTTTTTCATCGCTATTTGCAGTTTTTCCATCTCATAATAATGCGCACAACAAATCCTTACCATTTTGTTCAAATCCCTCAAAACCCCTCTTCCGATTGAACAAGATCCGCTGCGGACTGCCTGAGAGTGGAATTCGGCAAAACCCCTCAAGTTCCAGAGCTTCCTCTTCCAAGAACAGGATGGAGGAGTACAATTTGGCTATGAAGAAGATGATGAGGAATCCATATGAGTATCACCATGAACTCGGTATGAACTATACTGTGATAGCTGACAATTTGATCGTCGGTTCCCAGCCTCAGAAACCGGAAGATATCGATTTCCTGAAGGAGGAAGAAGGTGTTGCCTATATTCTAAATTTACAGCAGGATAAGGATGTCGAGTACTGGGGAATCGACTTACAGTCGGTTATAGAAAGATGTAAAGAACTTGGAATTCATCATATGAGGCAACCGGCAAAGGATTTCGATCCAGACTCCCTGAGAAATGGATTGCCCAAAGCTGTTTCCTTGTTAGAATGGGCGATTTCGGAGGGTAAAGGAAAAGCTTACGTGCATTGCACCGCTGGATTAGGCAGGGCCCCTGCCGTTGCAATAGCATACCTGTACTGGTTTTGTGGAATGAATGCAAGTTCTCTTCTACTTAGAAACTTAACATATGAAGCACTGACTTCAAAAAGACCTTGTGGACCAAGTAAAAAAGCCATCCGTGGAGCCACATACGATCTATCGAAAAATGATCCAGGGAAGGAGCCATTCGAGAGCCTTCCAGATAACGCATTCGAGGATATCGCAGATTGGGAGAGGAACTTGATTCAGGATCGGGTGCGTGCAATACGTGCAGGTTCAACGTCATTCGGTTTTTACCAGGATGATGATATAGAATGA | 2265 | 45.08 | MSCIHNTPLPCFSASSSSFPRRNRCASFKSRIHCTLGGTVAEPKSTTSAEPLLLNAVRGEDVERPPVWLMRQAGRKDYLLHSAVDLVGFAAHKPDSYSTHKVSYQVICEKYPSFRQRSENTDLVVEISLQPWKVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPIIANPISEASQVNEVREFVPEENVPYVGEALTILRKEVDNKAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLQKFTSSMARYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKKTHPDLPLILYASGSGGLLERLASTGVDVVSLDWTVDMAEGRRRLGADIAVQGNVDPGVLFGSKEFITQRINDTVKKAGKGKHILNLGHGIVVGTPEESVAHFFEVAKGIRSADLLLKTHQISRFYTILITSIVNEREEKRERISASHKKMGASSLACFSSLFAVFPSHNNAHNKSLPFCSNPSKPLFRLNKIRCGLPESGIRQNPSSSRASSSKNRMEEYNLAMKKMMRNPYEYHHELGMNYTVIADNLIVGSQPQKPEDIDFLKEEEGVAYILNLQQDKDVEYWGIDLQSVIERCKELGIHHMRQPAKDFDPDSLRNGLPKAVSLLEWAISEGKGKAYVHCTAGLGRAPAVAIAYLYWFCGMNASSLLLRNLTYEALTSKRPCGPSKKAIRGATYDLSKNDPGKEPFESLPDNAFEDIADWERNLIQDRVRAIRAGSTSFGFYQDDDIE | 754 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5828214 | 5834441 | + | CmoCh04G011420.1 | Cmo04g01142 | 380117 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g01142 | 754 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 545 | 708 | IPR020422 | GO:0006470|GO:0008138 | |
Cmo04g01142 | 754 | TIGRFAM | hemE: uroporphyrinogen decarboxylase | 103 | 411 | IPR006361 | GO:0004853|GO:0006779 | |
Cmo04g01142 | 754 | CDD | DSP_laforin-like | 544 | 697 | IPR045204 | GO:0019203|GO:0046838 | |
Cmo04g01142 | 754 | CDD | URO-D | 54 | 411 | IPR006361 | GO:0004853|GO:0006779 | |
Cmo04g01142 | 754 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 538 | 672 | IPR029021 | - | |
Cmo04g01142 | 754 | Gene3D | Protein tyrosine phosphatase superfamily | 528 | 741 | IPR029021 | - | |
Cmo04g01142 | 754 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 622 | 687 | IPR000387 | GO:0016311|GO:0016791 | |
Cmo04g01142 | 754 | Pfam | Uroporphyrinogen decarboxylase (URO-D) | 52 | 75 | IPR000257 | GO:0004853|GO:0006779 | |
Cmo04g01142 | 754 | Pfam | Uroporphyrinogen decarboxylase (URO-D) | 111 | 411 | IPR000257 | GO:0004853|GO:0006779 | |
Cmo04g01142 | 754 | PANTHER | UROPORPHYRINOGEN DECARBOXYLASE 2, CHLOROPLASTIC | 25 | 414 | - | - | |
Cmo04g01142 | 754 | ProSitePatterns | Uroporphyrinogen decarboxylase signature 1. | 66 | 75 | IPR000257 | GO:0004853|GO:0006779 | |
Cmo04g01142 | 754 | SUPERFAMILY | UROD/MetE-like | 52 | 414 | IPR038071 | - | |
Cmo04g01142 | 754 | Coils | Coil | 514 | 534 | - | - | |
Cmo04g01142 | 754 | Gene3D | - | 39 | 414 | IPR038071 | - | |
Cmo04g01142 | 754 | PANTHER | METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED | 25 | 414 | - | - | |
Cmo04g01142 | 754 | Hamap | Uroporphyrinogen decarboxylase [hemE]. | 50 | 414 | IPR006361 | GO:0004853|GO:0006779 | |
Cmo04g01142 | 754 | Pfam | Dual specificity phosphatase, catalytic domain | 568 | 669 | IPR000340 | GO:0008138|GO:0016311 | |
Cmo04g01142 | 754 | ProSitePatterns | Uroporphyrinogen decarboxylase signature 2. | 210 | 226 | IPR000257 | GO:0004853|GO:0006779 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g01142 | Cmo-Chr4:5828214 | Cmo16g00476 | Cmo-Chr16:2275976 | 2.39E-129 | dispersed | |
Cmo04g00112 | Cmo-Chr4:586830 | Cmo04g01142 | Cmo-Chr4:5828214 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g01142 | K01599 | - | csv:101212245 | 726.857 |