Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01142 ATGTCGTGCATTCACAACACCCCATTACCTTGTTTCTCTGCTTCCTCTTCTTCTTTCCCCAGAAGAAATCGATGCGCTTCTTTTAAGTCTCGAATCCACTGTACTCTTGGAGGAACTGTAGCAGAACCAAAATCTACCACTTCTGCAGAACCGTTGTTGCTTAATGCTGTTCGTGGTGAGGATGTCGAAAGACCTCCAGTTTGGTTGATGAGGCAAGCAGGGAGAAAAGACTATCTTTTGCACTCTGCGGTGGATTTGGTGGGATTTGCAGCCCATAAGCCGGATAGTTATAGTACTCATAAAGTGAGTTACCAAGTCATTTGTGAAAAATACCCTTCATTTCGTCAAAGGTCCGAAAATACGGATCTTGTTGTGGAAATTTCGCTTCAGCCTTGGAAAGTCTTTAAACCTGATGGGGTGATCTTATTCTCAGACATTCTCACTCCGCTATCCGGGATGAATATTCCCTTCGACATCGTCAAAGGTAAGGGTCCGATCATTGCTAACCCTATAAGCGAAGCTTCTCAAGTGAATGAAGTGAGGGAGTTTGTCCCTGAAGAGAATGTTCCATATGTTGGGGAAGCTTTAACGATTCTGCGAAAAGAGGTTGACAACAAAGCAGCAGTTCTTGGTTTCGTTGGGGCTCCTTTCACCCTTGCATCATACGTGGTCGAAGGTGGTTCGTCGAAGCACTTTTCAAAAATAAAAAGGCTCGCTTTCTCTCAGCCAAAGGTTCTTCATGCATTGCTCCAGAAGTTTACAAGCTCAATGGCTAGGTACGTTCAATACCAAGCAGACAACGGAGCGCAAGCCGTTCAAATCTTCGATTCGTGGGCGACAGAGCTCAGCCCCGTGGACTTCGAAGAATTCAGTCTCCCATACTTGAAGCAGATTGTGGACTCTGTGAAGAAAACACATCCAGACCTTCCACTGATTCTGTATGCCAGTGGGTCTGGAGGCTTACTTGAAAGGCTGGCTTCAACTGGTGTCGACGTAGTTAGCTTAGATTGGACGGTCGACATGGCTGAAGGTAGGAGGCGATTAGGAGCAGACATAGCAGTACAGGGTAATGTCGACCCTGGCGTTCTCTTCGGGTCCAAGGAGTTCATCACCCAAAGGATAAATGATACTGTGAAGAAGGCAGGTAAAGGGAAGCACATATTGAATCTAGGCCATGGCATTGTTGTGGGTACACCTGAGGAAAGTGTAGCTCATTTCTTTGAGGTTGCTAAAGGAATTAGGTCGGCGGATTTGCTCCTCAAAACCCACCAGATTTCTAGATTCTACACAATTTTGATTACTTCGATCGTTAACGAGAGGGAAGAAAAAAGGGAAAGAATCAGTGCATCTCATAAGAAAATGGGAGCTTCTAGCCTCGCTTGTTTTTCATCGCTATTTGCAGTTTTTCCATCTCATAATAATGCGCACAACAAATCCTTACCATTTTGTTCAAATCCCTCAAAACCCCTCTTCCGATTGAACAAGATCCGCTGCGGACTGCCTGAGAGTGGAATTCGGCAAAACCCCTCAAGTTCCAGAGCTTCCTCTTCCAAGAACAGGATGGAGGAGTACAATTTGGCTATGAAGAAGATGATGAGGAATCCATATGAGTATCACCATGAACTCGGTATGAACTATACTGTGATAGCTGACAATTTGATCGTCGGTTCCCAGCCTCAGAAACCGGAAGATATCGATTTCCTGAAGGAGGAAGAAGGTGTTGCCTATATTCTAAATTTACAGCAGGATAAGGATGTCGAGTACTGGGGAATCGACTTACAGTCGGTTATAGAAAGATGTAAAGAACTTGGAATTCATCATATGAGGCAACCGGCAAAGGATTTCGATCCAGACTCCCTGAGAAATGGATTGCCCAAAGCTGTTTCCTTGTTAGAATGGGCGATTTCGGAGGGTAAAGGAAAAGCTTACGTGCATTGCACCGCTGGATTAGGCAGGGCCCCTGCCGTTGCAATAGCATACCTGTACTGGTTTTGTGGAATGAATGCAAGTTCTCTTCTACTTAGAAACTTAACATATGAAGCACTGACTTCAAAAAGACCTTGTGGACCAAGTAAAAAAGCCATCCGTGGAGCCACATACGATCTATCGAAAAATGATCCAGGGAAGGAGCCATTCGAGAGCCTTCCAGATAACGCATTCGAGGATATCGCAGATTGGGAGAGGAACTTGATTCAGGATCGGGTGCGTGCAATACGTGCAGGTTCAACGTCATTCGGTTTTTACCAGGATGATGATATAGAATGA 2265 45.08 MSCIHNTPLPCFSASSSSFPRRNRCASFKSRIHCTLGGTVAEPKSTTSAEPLLLNAVRGEDVERPPVWLMRQAGRKDYLLHSAVDLVGFAAHKPDSYSTHKVSYQVICEKYPSFRQRSENTDLVVEISLQPWKVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPIIANPISEASQVNEVREFVPEENVPYVGEALTILRKEVDNKAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLQKFTSSMARYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKKTHPDLPLILYASGSGGLLERLASTGVDVVSLDWTVDMAEGRRRLGADIAVQGNVDPGVLFGSKEFITQRINDTVKKAGKGKHILNLGHGIVVGTPEESVAHFFEVAKGIRSADLLLKTHQISRFYTILITSIVNEREEKRERISASHKKMGASSLACFSSLFAVFPSHNNAHNKSLPFCSNPSKPLFRLNKIRCGLPESGIRQNPSSSRASSSKNRMEEYNLAMKKMMRNPYEYHHELGMNYTVIADNLIVGSQPQKPEDIDFLKEEEGVAYILNLQQDKDVEYWGIDLQSVIERCKELGIHHMRQPAKDFDPDSLRNGLPKAVSLLEWAISEGKGKAYVHCTAGLGRAPAVAIAYLYWFCGMNASSLLLRNLTYEALTSKRPCGPSKKAIRGATYDLSKNDPGKEPFESLPDNAFEDIADWERNLIQDRVRAIRAGSTSFGFYQDDDIE 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5828214 5834441 + CmoCh04G011420.1 Cmo04g01142 380117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01142 754 ProSiteProfiles Dual specificity protein phosphatase domain profile. 545 708 IPR020422 GO:0006470|GO:0008138
Cmo04g01142 754 TIGRFAM hemE: uroporphyrinogen decarboxylase 103 411 IPR006361 GO:0004853|GO:0006779
Cmo04g01142 754 CDD DSP_laforin-like 544 697 IPR045204 GO:0019203|GO:0046838
Cmo04g01142 754 CDD URO-D 54 411 IPR006361 GO:0004853|GO:0006779
Cmo04g01142 754 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 538 672 IPR029021 -
Cmo04g01142 754 Gene3D Protein tyrosine phosphatase superfamily 528 741 IPR029021 -
Cmo04g01142 754 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 622 687 IPR000387 GO:0016311|GO:0016791
Cmo04g01142 754 Pfam Uroporphyrinogen decarboxylase (URO-D) 52 75 IPR000257 GO:0004853|GO:0006779
Cmo04g01142 754 Pfam Uroporphyrinogen decarboxylase (URO-D) 111 411 IPR000257 GO:0004853|GO:0006779
Cmo04g01142 754 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 2, CHLOROPLASTIC 25 414 - -
Cmo04g01142 754 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 66 75 IPR000257 GO:0004853|GO:0006779
Cmo04g01142 754 SUPERFAMILY UROD/MetE-like 52 414 IPR038071 -
Cmo04g01142 754 Coils Coil 514 534 - -
Cmo04g01142 754 Gene3D - 39 414 IPR038071 -
Cmo04g01142 754 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 25 414 - -
Cmo04g01142 754 Hamap Uroporphyrinogen decarboxylase [hemE]. 50 414 IPR006361 GO:0004853|GO:0006779
Cmo04g01142 754 Pfam Dual specificity phosphatase, catalytic domain 568 669 IPR000340 GO:0008138|GO:0016311
Cmo04g01142 754 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 210 226 IPR000257 GO:0004853|GO:0006779
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01142 Cmo-Chr4:5828214 Cmo16g00476 Cmo-Chr16:2275976 2.39E-129 dispersed
Cmo04g00112 Cmo-Chr4:586830 Cmo04g01142 Cmo-Chr4:5828214 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01142 K01599 - csv:101212245 726.857