Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01155 ATGGATGAAATCCGAACCCCATGTGATTCCACCTCTTGTTCGAGACACCCACTTCCGGATTTTCATGTTTTGTTTACTCAGTCCGCTGCTGATGGGTTCTGTTCTTCAGGAAACGAGCAGGAAAAATGGAAGATTCTGAGAAAAAACCCTAATGGGTTCCGTTTTGGATTGGGTTTGTTCTTTTTGTTGCTTAATTTGGTCACCATTCGACCTGTTTTGAGCCAAGATTGGGATGGTGTGGTTGTCACACAGGCTGATTTCCAATCCCTTCAGGCGTTTAAGCAGGAGCTTAATGATCCTAAAGGGTTCTTGAAAAGTTGGAACGATAGTGGATTTGGGGCTTGTTCTGGTGGTTGGGTTGGGATTAAATGTGCTAAGGGACAGGTTATTGTTATTCAGCTTCCATGGAAGGGCTTGGGAGGTAGAATCACTGATAAGATCGGCCAACTTCAGGCCCTTAGGAAGCTCAGCTTACATGACAACTTCATTGGTGGATCAATCCCTTCTTCATTAGGACTTCTTCCGAATCTTCGAGGCGTTCAGTTGTTCAACAATCGATTTTCGGGTTCCATTCCAGCGTCATTGGGGCTTTGTCCTCTGCTTCAAACTCTTCATGTCAGTAACAATTTGCTCACCGGAGCTATCCCATCTACGTTGGCTAATTCCACGAAGCTTTATTGGCTTAACTTGAGTTTTAACTCATTTTCGGGTTCGATTCCGATGAGTCTAACTCGATCGGTGTCGCTTACTTATCTTGATCTTCAACACAACAATCTCTCAGGCAGCATCCCCGACTCTTGGGGCGGCGACGCCACTGATCAAAACCGGGTGTTTCAGCTCAAGTCGATGGCTCTTGATGGCAATCTCCTCTCAGGTATCATACCAGCTTCTTTAAGCAAGTTAAGTGAGCTTCAAGTTGTTTCTCTTGGCCACAATGGATTGAATGGTGGCATTCCAGAAGAAATTAGTAGGCTTTCTCTGCTCAAAACTCTGGATGTTTCTAACAATTTCCTTAATGGAAGTATGCCTCAAAGTTTTGATAGTTTGAGAAATCTCTCTGTTCTTAACTTGAGTAGAAACAGGTTCAATGGTCAAATTCCTGCAAATTTAGGGAACATTTCAACACTTAAACAACTTGATTTATCTCAGAACAATCTAAGTGGAGAAATACCAGCTTCTCTTGCTGAATTGGAAGGTCTTCAATCCTTAAATGTCTCGTACAACAACCTTTCGGGTTCTGTTCCTTCGGCTCTCGCCGAAAAATTTAGTGCAAGTTCCTTTGTTGGGAACATCCAGCTCTGTGGGTTCAGTGGTTCGACTCCGTGCCCGTCCCCGGTTCCTTCTCTAGAATCTCCAGCTCCTCCACCGGAAAGTTCAGTGTCTCGACATCGGAAGTTAAGTACTAAAGATATAATACTCATAGTTGCAGGAGCTCTCCTTCTAGTATTGGTTATAGTATTCTTTGTACTGCTGTGCTGCTTGATTAGGAAGAGGGCTGCTTCAAAAGAAAAGGGTGGTGGTGATGCAGCAGCAGCAGCAGCAGCCGGGGCTGCAAGGACGAAGAAGGACGTCCCTCCGACTAGCAGTGAAGTTGAAGTGGGAGGAGGGGATGCCGGTGGGAAGCTCGTCCATTTCGACGGGCAAACGGTGTTCACAGCAGATGATCTATTGTGTGCAACAGCAGAAATAATGGGAAAGAGTACTTATGGGACTGTTTACAAGGCCACATTGGAGGATGGAAATCAAGTTGCAGTGAAGAGATTGAGAGAGAAGATCACTAAGAGCCAGAAAGAATTTGAAGCAGAGGTCAACATTCTTGGCAAGGTCAGGCATCCAAATCTTCTAGCTTTAAGAGCTTATTACTTGGGACCCAAAGGAGAAAAGCTTCTCGTTTTCGATTACATGCCGAACGGGAGTCTTGCAGCGTTCCTGCACGCTCGTGGACCGGACACATCCATTGATTGGCCGACGAGGATGAAGATTGCTCAGGGTATGACTCGTGGCCTGTGTCACCTTCACGCGCACGAGAACAGTATTCATGGAAACCTAACATCCAGCAACATTCTACTTGATGAGTACAAAAATGCTAAGATTGCAGATTTTGGCTTGTCAAGGTTGATGACAGCAGCCGCAAGCTCAAATGTGATAGCAACAGCAGGGGCACTCGGGTATCGAGCACCAGAGCTCTCGAAGCTGAAGAAAGCAAATACGAAAACCGACATTTACAGCCTTGGAGTAATCATATTGGAACTCTTGACAGGGAAGTCCCCGGGTGAAGCCATGAACGGTGTCGATTTGCCACAATGGGTTGCATCAATAGTCAAAGAGGAGTGGACTAATGAAGTTTTCGATTTGGAGTTGATGAGGGATGCATCTAGCATTGGAGATGAATTACTAAACACTCTGAAACTCGCTTTGCATTGTGTCGATCCTTCACCGTCGGCAAGACCAGAAGTTCAACAAGTTCTGCAACAACTGGAGGAGATTAGGCCAGAAACCACTCCCAGTTCTGGGGATGATGGAGCAGGAGGAGGAGGAGGAGGAGGAGGACCCCCCCCTTCTACAAGCGAGTGA 2574 46.0 MDEIRTPCDSTSCSRHPLPDFHVLFTQSAADGFCSSGNEQEKWKILRKNPNGFRFGLGLFFLLLNLVTIRPVLSQDWDGVVVTQADFQSLQAFKQELNDPKGFLKSWNDSGFGACSGGWVGIKCAKGQVIVIQLPWKGLGGRITDKIGQLQALRKLSLHDNFIGGSIPSSLGLLPNLRGVQLFNNRFSGSIPASLGLCPLLQTLHVSNNLLTGAIPSTLANSTKLYWLNLSFNSFSGSIPMSLTRSVSLTYLDLQHNNLSGSIPDSWGGDATDQNRVFQLKSMALDGNLLSGIIPASLSKLSELQVVSLGHNGLNGGIPEEISRLSLLKTLDVSNNFLNGSMPQSFDSLRNLSVLNLSRNRFNGQIPANLGNISTLKQLDLSQNNLSGEIPASLAELEGLQSLNVSYNNLSGSVPSALAEKFSASSFVGNIQLCGFSGSTPCPSPVPSLESPAPPPESSVSRHRKLSTKDIILIVAGALLLVLVIVFFVLLCCLIRKRAASKEKGGGDAAAAAAAGAARTKKDVPPTSSEVEVGGGDAGGKLVHFDGQTVFTADDLLCATAEIMGKSTYGTVYKATLEDGNQVAVKRLREKITKSQKEFEAEVNILGKVRHPNLLALRAYYLGPKGEKLLVFDYMPNGSLAAFLHARGPDTSIDWPTRMKIAQGMTRGLCHLHAHENSIHGNLTSSNILLDEYKNAKIADFGLSRLMTAAASSNVIATAGALGYRAPELSKLKKANTKTDIYSLGVIILELLTGKSPGEAMNGVDLPQWVASIVKEEWTNEVFDLELMRDASSIGDELLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPETTPSSGDDGAGGGGGGGGPPPSTSE 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5892448 5895693 + CmoCh04G011550.1 Cmo04g01155 380130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01155 857 Gene3D Transferase(Phosphotransferase) domain 1 636 840 - -
Cmo04g01155 857 Pfam Leucine rich repeat 350 410 IPR001611 GO:0005515
Cmo04g01155 857 Pfam Leucine rich repeat 279 336 IPR001611 GO:0005515
Cmo04g01155 857 Pfam Leucine rich repeat 200 259 IPR001611 GO:0005515
Cmo04g01155 857 Gene3D Ribonuclease Inhibitor 342 444 IPR032675 -
Cmo04g01155 857 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 19 835 - -
Cmo04g01155 857 MobiDBLite consensus disorder prediction 826 857 - -
Cmo04g01155 857 SUPERFAMILY L domain-like 123 420 - -
Cmo04g01155 857 SMART LRR_typ_2 349 373 IPR003591 -
Cmo04g01155 857 SMART LRR_typ_2 247 270 IPR003591 -
Cmo04g01155 857 SMART LRR_typ_2 397 420 IPR003591 -
Cmo04g01155 857 SMART LRR_typ_2 150 174 IPR003591 -
Cmo04g01155 857 SMART LRR_typ_2 325 348 IPR003591 -
Cmo04g01155 857 CDD STKc_IRAK 564 829 - -
Cmo04g01155 857 PRINTS Leucine-rich repeat signature 249 262 - -
Cmo04g01155 857 PRINTS Leucine-rich repeat signature 373 386 - -
Cmo04g01155 857 Gene3D Ribonuclease Inhibitor 83 242 IPR032675 -
Cmo04g01155 857 Gene3D Ribonuclease Inhibitor 243 341 IPR032675 -
Cmo04g01155 857 SUPERFAMILY Protein kinase-like (PK-like) 562 830 IPR011009 -
Cmo04g01155 857 Pfam Protein tyrosine and serine/threonine kinase 561 826 IPR001245 GO:0004672|GO:0006468
Cmo04g01155 857 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 19 835 - -
Cmo04g01155 857 Pfam Leucine rich repeat N-terminal domain 85 124 IPR013210 -
Cmo04g01155 857 MobiDBLite consensus disorder prediction 515 535 - -
Cmo04g01155 857 Gene3D Phosphorylase Kinase; domain 1 564 635 - -
Cmo04g01155 857 ProSiteProfiles Protein kinase domain profile. 558 829 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01155 Cmo04g00119 ECH
Cmo04g00119 Cmo04g01155 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01155 Cmo-Chr4:5892448 Cmo05g01333 Cmo-Chr5:10335096 1.99E-16 dispersed
Cmo16g01091 Cmo-Chr16:7707301 Cmo04g01155 Cmo-Chr4:5892448 2.31E-23 dispersed
Cmo17g01120 Cmo-Chr17:9163838 Cmo04g01155 Cmo-Chr4:5892448 3.06E-37 dispersed
Cmo08g00064 Cmo-Chr8:369338 Cmo04g01155 Cmo-Chr4:5892448 2.32E-103 transposed
Cmo17g01218 Cmo-Chr17:9719525 Cmo04g01155 Cmo-Chr4:5892448 3.36E-13 transposed
Cmo14g00037 Cmo-Chr14:184002 Cmo04g01155 Cmo-Chr4:5892448 0 wgd
Cmo04g00119 Cmo-Chr4:620315 Cmo04g01155 Cmo-Chr4:5892448 0 wgd
Cmo04g01155 Cmo-Chr4:5892448 Cmo06g00205 Cmo-Chr6:1113470 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74267 PF07714 PK_Tyr_Ser-Thr 4.30E-41 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01155 - - csv:101214895 1348.57