Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g01166 | ATGGGTGGCAATTCGCCGTGCGCCTCGTGCAAACTCCTCCGGCGACGGTGCGCCAAAGACTGCATTTTTGCTCCCTATTTTCCCTCCGATGACCCCCACAAGTTTGCTATTGTTCATAAGGTTTTTGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAACTGCCAGTGCAGCAAAGAGGCGACGCCGTGATGAGCCTAGTTTATGAGGCAAGTGCAAGAGTGAGGGACCCAGTTTATGGCTGCGTAGGGGCAATTTCGTACTTACAAAATCAAGTCTCACAGCTACAGATGCAATTGGCTGTCGCTCAAGCTGAGATTCTTTGCATCCAGATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGACGAGAAACCCCCCACTCTTCTACTCCCCCCGCCGTCATCGCCGCCGTCTCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGATGCCATTTTTGGACATGACATCGTTTCTTAA | 501 | 50.7 | MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCPQIHSDEKPPTLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS | 166 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5949123 | 5950269 | - | CmoCh04G011660.1 | Cmo04g01166 | 380141 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g01166 | 166 | Pfam | Lateral organ boundaries (LOB) domain | 6 | 103 | IPR004883 | - | |
Cmo04g01166 | 166 | Coils | Coil | 85 | 105 | - | - | |
Cmo04g01166 | 166 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 2 | 122 | - | - | |
Cmo04g01166 | 166 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 12-LIKE | 2 | 122 | - | - | |
Cmo04g01166 | 166 | ProSiteProfiles | LOB domain profile. | 5 | 106 | IPR004883 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g01166 | Cmo04g00129 | ECH | |
Cmo04g00129 | Cmo04g01166 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g01166 | Cmo-Chr4:5949123 | Cmo20g00354 | Cmo-Chr20:1742608 | 1.34E-57 | dispersed | |
Cmo02g00023 | Cmo-Chr2:137845 | Cmo04g01166 | Cmo-Chr4:5949123 | 1.11E-58 | transposed | |
Cmo11g02055 | Cmo-Chr11:13918212 | Cmo04g01166 | Cmo-Chr4:5949123 | 2.70E-55 | transposed | |
Cmo13g00481 | Cmo-Chr13:5814170 | Cmo04g01166 | Cmo-Chr4:5949123 | 2.04E-59 | transposed | |
Cmo02g00726 | Cmo-Chr2:4587924 | Cmo04g01166 | Cmo-Chr4:5949123 | 2.36E-67 | wgd | |
Cmo04g00129 | Cmo-Chr4:659700 | Cmo04g01166 | Cmo-Chr4:5949123 | 4.55E-103 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9596 | PF03195 | LOB | 3.70E-42 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g01166 | - | - | csv:101204801 | 318.546 |