Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01166 ATGGGTGGCAATTCGCCGTGCGCCTCGTGCAAACTCCTCCGGCGACGGTGCGCCAAAGACTGCATTTTTGCTCCCTATTTTCCCTCCGATGACCCCCACAAGTTTGCTATTGTTCATAAGGTTTTTGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAACTGCCAGTGCAGCAAAGAGGCGACGCCGTGATGAGCCTAGTTTATGAGGCAAGTGCAAGAGTGAGGGACCCAGTTTATGGCTGCGTAGGGGCAATTTCGTACTTACAAAATCAAGTCTCACAGCTACAGATGCAATTGGCTGTCGCTCAAGCTGAGATTCTTTGCATCCAGATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGACGAGAAACCCCCCACTCTTCTACTCCCCCCGCCGTCATCGCCGCCGTCTCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGATGCCATTTTTGGACATGACATCGTTTCTTAA 501 50.7 MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCPQIHSDEKPPTLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5949123 5950269 - CmoCh04G011660.1 Cmo04g01166 380141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01166 166 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Cmo04g01166 166 Coils Coil 85 105 - -
Cmo04g01166 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 122 - -
Cmo04g01166 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 2 122 - -
Cmo04g01166 166 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01166 Cmo04g00129 ECH
Cmo04g00129 Cmo04g01166 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01166 Cmo-Chr4:5949123 Cmo20g00354 Cmo-Chr20:1742608 1.34E-57 dispersed
Cmo02g00023 Cmo-Chr2:137845 Cmo04g01166 Cmo-Chr4:5949123 1.11E-58 transposed
Cmo11g02055 Cmo-Chr11:13918212 Cmo04g01166 Cmo-Chr4:5949123 2.70E-55 transposed
Cmo13g00481 Cmo-Chr13:5814170 Cmo04g01166 Cmo-Chr4:5949123 2.04E-59 transposed
Cmo02g00726 Cmo-Chr2:4587924 Cmo04g01166 Cmo-Chr4:5949123 2.36E-67 wgd
Cmo04g00129 Cmo-Chr4:659700 Cmo04g01166 Cmo-Chr4:5949123 4.55E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9596 PF03195 LOB 3.70E-42 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01166 - - csv:101204801 318.546