Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g01170 | ATGCTTATAAGAGGTGCTGTAGGAAATGACTCGTCTCTGCGTAAAGCTCCTTCCTGGTTTAAGGGATGGAAATCTCCTTGGAGAGGAAAAGTGAAGGGTGGAGAATTAATTCCTGAAGGAGAGGAAGAATTGTATTATCTTGGGATCCGAACAAGAAAATTGTTTTCTGACTTGTTCAGTGATGATTATAGCTCAGAAGTATATACAATTAAAGCAACTCAGGTTCCTCGGGCATCAGCTAGTGCTGTGGCATTTGGTATGGGGCTATTTAGTGGGAGAGGAAGCCTTGGATCAGATCGTCGTCGAGCTTTTTCTGTCATCAGTGAGAGTCGTGCCAGTGATACGATGCTTAGGTTTTTTGATTGTTGTCAGAAGTACGAGCTCGTGCATGATGAATCTAGCACTCGTACCCTTGAACCAGATTATAGGAAGAATCAGGAACCTGCCGTTGATAAACTCAAGGAACCTGTACTTGATGATATAACTAAGTCATTCACTGAACGTTATGGGCTAAATTTTACCCGGCTGCACATTTCATCACTTTGGTTTCTCTGTAAGCAGGTTGTTTTGTTGGAGTGGACGGATGATGTGGAGTTGTTTATATTGAAGGGTTATGGTAATTCATTAAACTATAAAATGGGAATTCCTTTGTTGGAAGATGTTATTCAATCCATGAAGCAAGCCATCAAGGCCAAAGAAGAAAAGCTAGTTCTTGGCAGCTATGAGAAGGCAAGACTTCGTTTTGCTCATGCTGAAACTGTAGTTCCATTCACATGTTTGCTCGGGCTTTTCCTTGAAGGACCTGATGTTGGACAAACACTAAGGGAGCAGCCTTTGCAACTTCCTCCACAGCCTCCAGCTACTAGAATATGGAAGGGAAGCACCGTTGCACCTTTTGCTGGGAATAACATGCTGGTTCTCTATAGCTGCCCTGCTAACTTGTCAGATAAGTACTTTGTGCGAGTTTTGCATAATGAAGAACCCATAACAATGCCGGGTTGTGACAATTCGGATTTTTGTTCCTTCAAAGTGTTCATGGAAAACATTGTGGCTCCTCATCTTGAACATGATTTTGACACATTGTGCACTGTGGATGGGGAAGAACCTGTGCTGGAGCCCGAATCAAACGCTAGACTCAGATCTGAGTTGAATCTTTCTTACTCTCTCAGACCTTCCCCTCTCTCAACCATGGCTTCCCATTCCCCTAACCTTGAGTGTCGGATGTACGAAGCCAAGTACCCGGAGGTAGACATGGCCGTCATGATCCAGGTCAAGAACATCGCCGACATGGGCGCCTACGTCTCCCTCCTTGAGTACAACAACATCGAGGGTATGATTCTCTTTTCCGAGCTCTCTCGCCGTCGTATTCGTAGTGTTAGCAGTTTAATTAAGGTTGGACGAATCGAGCCTGTCATGGTCCTCAGGGTCGACAAGGAGAAGGGCTATATTGATTTGAGTAAGAGAAGGGTGTCTGAGGAGGATATTCAGGCCTGCGAGGAGAGGTATAACAAGAGCAAGCTTGTTCACTCTATAATGCGCCATGTTGCTGAGACTATGAACCTTGATTTGGAGGACTTGTATGTCCATGTTGGCTGGCCTTTGTACCGGAAATATGGTCACGGTTTTGAGGCATTCAAGATCGTTGTAACTGACCCTGACTCGGTGTTGAATTCTCTTACCCGTGAAGTCAAGGAAGCTGGTCCCGACGGACAGGAGGTAACTAAGGTAGTTCCCGCAATGTCTGAGGATGTAAAAGATGCACTAATAAAGAATATTAGAAGAAGAATGACTCCCCAACCCTTGAAGGTTCGGGCTGATATTGAAATGAAGTGCTTCCAGTTTGATGGCGTTCTTCACATTAAGGAAGCAATGCGGAAAGCTGAAGCTGTTGGAAACGATGATTGTCCTGTTAAAATTAAATTGGTTGCTCCTCCACTCTACGTCCTTACTACCCAGACACTTGACAAGGAGCAAGGAATCACTGTTCTTGAGAAGGCGATCATTGCTTGCACCGAGGCAATCGAGCATCACAAGGGAAAGCTTGTGGTGAAGGAGGCACCTAGAGCGGTGAGTGAAAGAGATGACAAATTGCTTGCCGAGCACATGGCGAAGCTACGACAAGACAACGAAGAAATCAGCGGAGACGAGGATAGCGAGGAAGAGGAAGACACGGGGATGGGAGAAATTGATGTCGAGAATGCAGGTTCCGGGATCACCGAGTAA | 2223 | 45.39 | MLIRGAVGNDSSLRKAPSWFKGWKSPWRGKVKGGELIPEGEEELYYLGIRTRKLFSDLFSDDYSSEVYTIKATQVPRASASAVAFGMGLFSGRGSLGSDRRRAFSVISESRASDTMLRFFDCCQKYELVHDESSTRTLEPDYRKNQEPAVDKLKEPVLDDITKSFTERYGLNFTRLHISSLWFLCKQVVLLEWTDDVELFILKGYGNSLNYKMGIPLLEDVIQSMKQAIKAKEEKLVLGSYEKARLRFAHAETVVPFTCLLGLFLEGPDVGQTLREQPLQLPPQPPATRIWKGSTVAPFAGNNMLVLYSCPANLSDKYFVRVLHNEEPITMPGCDNSDFCSFKVFMENIVAPHLEHDFDTLCTVDGEEPVLEPESNARLRSELNLSYSLRPSPLSTMASHSPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETMNLDLEDLYVHVGWPLYRKYGHGFEAFKIVVTDPDSVLNSLTREVKEAGPDGQEVTKVVPAMSEDVKDALIKNIRRRMTPQPLKVRADIEMKCFQFDGVLHIKEAMRKAEAVGNDDCPVKIKLVAPPLYVLTTQTLDKEQGITVLEKAIIACTEAIEHHKGKLVVKEAPRAVSERDDKLLAEHMAKLRQDNEEISGDEDSEEEEDTGMGEIDVENAGSGITE | 740 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5966252 | 5978064 | + | CmoCh04G011700.1 | Cmo04g01170 | 380145 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g01170 | 740 | SUPERFAMILY | eIF2alpha middle domain-like | 490 | 595 | IPR024054 | - | |
Cmo04g01170 | 740 | MobiDBLite | consensus disorder prediction | 704 | 740 | - | - | |
Cmo04g01170 | 740 | Pfam | Eukaryotic translation initiation factor 2 alpha subunit | 526 | 656 | IPR011488 | GO:0003723|GO:0003743 | |
Cmo04g01170 | 740 | Gene3D | Translation initiation factor 2; subunit 1; domain 2 | 491 | 567 | IPR024054 | - | |
Cmo04g01170 | 740 | ProSiteProfiles | S1 domain profile. | 417 | 488 | IPR003029 | GO:0003676 | |
Cmo04g01170 | 740 | CDD | S1_IF2_alpha | 414 | 489 | IPR044126 | GO:0003723 | |
Cmo04g01170 | 740 | Pfam | S1 RNA binding domain | 414 | 488 | IPR003029 | GO:0003676 | |
Cmo04g01170 | 740 | SUPERFAMILY | Phosphoglycerate mutase-like | 17 | 368 | IPR029033 | - | |
Cmo04g01170 | 740 | Coils | Coil | 215 | 235 | - | - | |
Cmo04g01170 | 740 | MobiDBLite | consensus disorder prediction | 712 | 728 | - | - | |
Cmo04g01170 | 740 | SMART | S1_6 | 415 | 488 | IPR022967 | - | |
Cmo04g01170 | 740 | Gene3D | - | 4 | 355 | IPR029033 | - | |
Cmo04g01170 | 740 | Gene3D | EIF_2_alpha | 601 | 723 | IPR024055 | - | |
Cmo04g01170 | 740 | Gene3D | - | 402 | 490 | IPR012340 | - | |
Cmo04g01170 | 740 | SUPERFAMILY | Nucleic acid-binding proteins | 407 | 488 | IPR012340 | - | |
Cmo04g01170 | 740 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 | 401 | 740 | IPR011488 | GO:0003723|GO:0003743 | |
Cmo04g01170 | 740 | CDD | HP_HAP_like | 34 | 325 | IPR000560 | - | |
Cmo04g01170 | 740 | PANTHER | BNAC04G04870D PROTEIN | 401 | 740 | - | - | |
Cmo04g01170 | 740 | Coils | Coil | 702 | 722 | - | - | |
Cmo04g01170 | 740 | Pfam | Histidine phosphatase superfamily (branch 2) | 13 | 325 | IPR000560 | - | |
Cmo04g01170 | 740 | SUPERFAMILY | eIF-2-alpha, C-terminal domain | 599 | 715 | IPR024055 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g00132 | Cmo04g01170 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00132 | Cmo-Chr4:668482 | Cmo04g01170 | Cmo-Chr4:5966252 | 0 | dispersed | |
Cmo04g00133 | Cmo-Chr4:676530 | Cmo04g01170 | Cmo-Chr4:5966252 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g01170 | K03237 | - | csv:101209681 | 638.262 |