Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01170 ATGCTTATAAGAGGTGCTGTAGGAAATGACTCGTCTCTGCGTAAAGCTCCTTCCTGGTTTAAGGGATGGAAATCTCCTTGGAGAGGAAAAGTGAAGGGTGGAGAATTAATTCCTGAAGGAGAGGAAGAATTGTATTATCTTGGGATCCGAACAAGAAAATTGTTTTCTGACTTGTTCAGTGATGATTATAGCTCAGAAGTATATACAATTAAAGCAACTCAGGTTCCTCGGGCATCAGCTAGTGCTGTGGCATTTGGTATGGGGCTATTTAGTGGGAGAGGAAGCCTTGGATCAGATCGTCGTCGAGCTTTTTCTGTCATCAGTGAGAGTCGTGCCAGTGATACGATGCTTAGGTTTTTTGATTGTTGTCAGAAGTACGAGCTCGTGCATGATGAATCTAGCACTCGTACCCTTGAACCAGATTATAGGAAGAATCAGGAACCTGCCGTTGATAAACTCAAGGAACCTGTACTTGATGATATAACTAAGTCATTCACTGAACGTTATGGGCTAAATTTTACCCGGCTGCACATTTCATCACTTTGGTTTCTCTGTAAGCAGGTTGTTTTGTTGGAGTGGACGGATGATGTGGAGTTGTTTATATTGAAGGGTTATGGTAATTCATTAAACTATAAAATGGGAATTCCTTTGTTGGAAGATGTTATTCAATCCATGAAGCAAGCCATCAAGGCCAAAGAAGAAAAGCTAGTTCTTGGCAGCTATGAGAAGGCAAGACTTCGTTTTGCTCATGCTGAAACTGTAGTTCCATTCACATGTTTGCTCGGGCTTTTCCTTGAAGGACCTGATGTTGGACAAACACTAAGGGAGCAGCCTTTGCAACTTCCTCCACAGCCTCCAGCTACTAGAATATGGAAGGGAAGCACCGTTGCACCTTTTGCTGGGAATAACATGCTGGTTCTCTATAGCTGCCCTGCTAACTTGTCAGATAAGTACTTTGTGCGAGTTTTGCATAATGAAGAACCCATAACAATGCCGGGTTGTGACAATTCGGATTTTTGTTCCTTCAAAGTGTTCATGGAAAACATTGTGGCTCCTCATCTTGAACATGATTTTGACACATTGTGCACTGTGGATGGGGAAGAACCTGTGCTGGAGCCCGAATCAAACGCTAGACTCAGATCTGAGTTGAATCTTTCTTACTCTCTCAGACCTTCCCCTCTCTCAACCATGGCTTCCCATTCCCCTAACCTTGAGTGTCGGATGTACGAAGCCAAGTACCCGGAGGTAGACATGGCCGTCATGATCCAGGTCAAGAACATCGCCGACATGGGCGCCTACGTCTCCCTCCTTGAGTACAACAACATCGAGGGTATGATTCTCTTTTCCGAGCTCTCTCGCCGTCGTATTCGTAGTGTTAGCAGTTTAATTAAGGTTGGACGAATCGAGCCTGTCATGGTCCTCAGGGTCGACAAGGAGAAGGGCTATATTGATTTGAGTAAGAGAAGGGTGTCTGAGGAGGATATTCAGGCCTGCGAGGAGAGGTATAACAAGAGCAAGCTTGTTCACTCTATAATGCGCCATGTTGCTGAGACTATGAACCTTGATTTGGAGGACTTGTATGTCCATGTTGGCTGGCCTTTGTACCGGAAATATGGTCACGGTTTTGAGGCATTCAAGATCGTTGTAACTGACCCTGACTCGGTGTTGAATTCTCTTACCCGTGAAGTCAAGGAAGCTGGTCCCGACGGACAGGAGGTAACTAAGGTAGTTCCCGCAATGTCTGAGGATGTAAAAGATGCACTAATAAAGAATATTAGAAGAAGAATGACTCCCCAACCCTTGAAGGTTCGGGCTGATATTGAAATGAAGTGCTTCCAGTTTGATGGCGTTCTTCACATTAAGGAAGCAATGCGGAAAGCTGAAGCTGTTGGAAACGATGATTGTCCTGTTAAAATTAAATTGGTTGCTCCTCCACTCTACGTCCTTACTACCCAGACACTTGACAAGGAGCAAGGAATCACTGTTCTTGAGAAGGCGATCATTGCTTGCACCGAGGCAATCGAGCATCACAAGGGAAAGCTTGTGGTGAAGGAGGCACCTAGAGCGGTGAGTGAAAGAGATGACAAATTGCTTGCCGAGCACATGGCGAAGCTACGACAAGACAACGAAGAAATCAGCGGAGACGAGGATAGCGAGGAAGAGGAAGACACGGGGATGGGAGAAATTGATGTCGAGAATGCAGGTTCCGGGATCACCGAGTAA 2223 45.39 MLIRGAVGNDSSLRKAPSWFKGWKSPWRGKVKGGELIPEGEEELYYLGIRTRKLFSDLFSDDYSSEVYTIKATQVPRASASAVAFGMGLFSGRGSLGSDRRRAFSVISESRASDTMLRFFDCCQKYELVHDESSTRTLEPDYRKNQEPAVDKLKEPVLDDITKSFTERYGLNFTRLHISSLWFLCKQVVLLEWTDDVELFILKGYGNSLNYKMGIPLLEDVIQSMKQAIKAKEEKLVLGSYEKARLRFAHAETVVPFTCLLGLFLEGPDVGQTLREQPLQLPPQPPATRIWKGSTVAPFAGNNMLVLYSCPANLSDKYFVRVLHNEEPITMPGCDNSDFCSFKVFMENIVAPHLEHDFDTLCTVDGEEPVLEPESNARLRSELNLSYSLRPSPLSTMASHSPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETMNLDLEDLYVHVGWPLYRKYGHGFEAFKIVVTDPDSVLNSLTREVKEAGPDGQEVTKVVPAMSEDVKDALIKNIRRRMTPQPLKVRADIEMKCFQFDGVLHIKEAMRKAEAVGNDDCPVKIKLVAPPLYVLTTQTLDKEQGITVLEKAIIACTEAIEHHKGKLVVKEAPRAVSERDDKLLAEHMAKLRQDNEEISGDEDSEEEEDTGMGEIDVENAGSGITE 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5966252 5978064 + CmoCh04G011700.1 Cmo04g01170 380145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01170 740 SUPERFAMILY eIF2alpha middle domain-like 490 595 IPR024054 -
Cmo04g01170 740 MobiDBLite consensus disorder prediction 704 740 - -
Cmo04g01170 740 Pfam Eukaryotic translation initiation factor 2 alpha subunit 526 656 IPR011488 GO:0003723|GO:0003743
Cmo04g01170 740 Gene3D Translation initiation factor 2; subunit 1; domain 2 491 567 IPR024054 -
Cmo04g01170 740 ProSiteProfiles S1 domain profile. 417 488 IPR003029 GO:0003676
Cmo04g01170 740 CDD S1_IF2_alpha 414 489 IPR044126 GO:0003723
Cmo04g01170 740 Pfam S1 RNA binding domain 414 488 IPR003029 GO:0003676
Cmo04g01170 740 SUPERFAMILY Phosphoglycerate mutase-like 17 368 IPR029033 -
Cmo04g01170 740 Coils Coil 215 235 - -
Cmo04g01170 740 MobiDBLite consensus disorder prediction 712 728 - -
Cmo04g01170 740 SMART S1_6 415 488 IPR022967 -
Cmo04g01170 740 Gene3D - 4 355 IPR029033 -
Cmo04g01170 740 Gene3D EIF_2_alpha 601 723 IPR024055 -
Cmo04g01170 740 Gene3D - 402 490 IPR012340 -
Cmo04g01170 740 SUPERFAMILY Nucleic acid-binding proteins 407 488 IPR012340 -
Cmo04g01170 740 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 401 740 IPR011488 GO:0003723|GO:0003743
Cmo04g01170 740 CDD HP_HAP_like 34 325 IPR000560 -
Cmo04g01170 740 PANTHER BNAC04G04870D PROTEIN 401 740 - -
Cmo04g01170 740 Coils Coil 702 722 - -
Cmo04g01170 740 Pfam Histidine phosphatase superfamily (branch 2) 13 325 IPR000560 -
Cmo04g01170 740 SUPERFAMILY eIF-2-alpha, C-terminal domain 599 715 IPR024055 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00132 Cmo04g01170 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00132 Cmo-Chr4:668482 Cmo04g01170 Cmo-Chr4:5966252 0 dispersed
Cmo04g00133 Cmo-Chr4:676530 Cmo04g01170 Cmo-Chr4:5966252 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01170 K03237 - csv:101209681 638.262