Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g01174 | ATGCACTTCCATTTCATTCCATTCATCTTTGCAAAATCAAATCCAAGCACAAAAGGCAACAGTATGTGCGCAGTTGCAGCGCCGACGACAACCACGACGACGATGACTCCATTATTCTCACCTCCAAAAGTTGCTTCACCACTCTACAAGTCGTACTCTCTGAATTATTCTTCTCCTTCTCCTTCTTATTCTTCTTTGCCGAGATCCGTGTCCTGTCCGCCGTCTGCCTCGTCATTGCCTGATGTTGATACTGTTTTGAAGAGGAGGAGGCCGGCGAGAATTGACGTGCCGACGATTGTGCCGTCCATCGGTTTTGGATTCGGAACTTTCGAGACGCCGGAGGTGATGGAGGAGGAAGGAGAAGGATATTCGGTTTATTGTAAAAGAGGAAGAAGACGGATTGCCATGGAGGATCGATTCTCAGCCACAGTTGGAATTCAAGGAGATTCTCGGCAGGCTTTCTTCGGAATTTTCGATGGACACGGAGGAGCACAAGTGGCGGAAATCGCAGCGAAAAGAATGAGCGAGAATGTAATCGATCAAGTAACGAGAAGAACCGAATCGGAACTCGAGGAAGCAATCAAAGACGGCTATCTGGCGACCGATCGGGAAGTATCGGAGCAAGGAGTCAGCGGCGGCGCCTGTTCCGCCACCGCATTGATACGGAACGGACATCTCGCAGTCTCGAACGTCGGCGATTGTCGCGCCGTGTTGAGTCGAAAGGGAAAGGCGGAAGCCCTAACCTCCGATCACCGGGCGTGTAGAGAAGACGAGAGAAATCGGATCGAAAAATCGGGCGGTTATGTAGACTGTTGCCGTGGGGCATGGAGAGTTCAAGGAACACTGGCTGTATCTCGAGCCATTGGAGACAAGCATCTGAAACAGTGGGTGATATCAGAGCCGGAGACGAGAGTAGTGAAGATCGAGGATGATTGCGATTACTTGATCCTTGCTTCTGATGGTCTTTGGGACAAGGTGAGTTTCGTTTCGTTTCAACAACTCTCATCCTCCTATACAATTTTTTTTCAAAAAATGTAA | 1038 | 49.42 | MHFHFIPFIFAKSNPSTKGNSMCAVAAPTTTTTTMTPLFSPPKVASPLYKSYSLNYSSPSPSYSSLPRSVSCPPSASSLPDVDTVLKRRRPARIDVPTIVPSIGFGFGTFETPEVMEEEGEGYSVYCKRGRRRIAMEDRFSATVGIQGDSRQAFFGIFDGHGGAQVAEIAAKRMSENVIDQVTRRTESELEEAIKDGYLATDREVSEQGVSGGACSATALIRNGHLAVSNVGDCRAVLSRKGKAEALTSDHRACREDERNRIEKSGGYVDCCRGAWRVQGTLAVSRAIGDKHLKQWVISEPETRVVKIEDDCDYLILASDGLWDKVSFVSFQQLSSSYTIFFQKM | 345 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5994023 | 5995278 | - | CmoCh04G011740.1 | Cmo04g01174 | 380149 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g01174 | 345 | PANTHER | PROTEIN PHOSPHATASE 2C | 55 | 327 | IPR015655 | GO:0004722|GO:0006470 | |
Cmo04g01174 | 345 | Gene3D | - | 117 | 338 | IPR036457 | - | |
Cmo04g01174 | 345 | CDD | PP2Cc | 122 | 327 | IPR001932 | - | |
Cmo04g01174 | 345 | ProSitePatterns | PPM-type phosphatase domain signature. | 154 | 162 | IPR000222 | GO:0043169 | |
Cmo04g01174 | 345 | PANTHER | PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED | 55 | 327 | - | - | |
Cmo04g01174 | 345 | SMART | PP2C_4 | 113 | 340 | IPR001932 | - | |
Cmo04g01174 | 345 | Pfam | Protein phosphatase 2C | 129 | 327 | IPR001932 | - | |
Cmo04g01174 | 345 | SUPERFAMILY | PP2C-like | 122 | 327 | IPR036457 | - | |
Cmo04g01174 | 345 | ProSiteProfiles | PPM-type phosphatase domain profile. | 122 | 345 | IPR001932 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g01174 | Cmo04g00143 | ECH | |
Cmo04g00143 | Cmo04g01174 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00143 | Cmo-Chr4:736275 | Cmo04g01174 | Cmo-Chr4:5994023 | 9.45E-166 | dispersed | |
Cmo04g01174 | Cmo-Chr4:5994023 | Cmo15g00018 | Cmo-Chr15:135022 | 1.04E-75 | dispersed | |
Cmo13g00046 | Cmo-Chr13:280223 | Cmo04g01174 | Cmo-Chr4:5994023 | 2.05E-14 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g01174 | K17506 | - | csv:101208170 | 414.846 |