Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01174 ATGCACTTCCATTTCATTCCATTCATCTTTGCAAAATCAAATCCAAGCACAAAAGGCAACAGTATGTGCGCAGTTGCAGCGCCGACGACAACCACGACGACGATGACTCCATTATTCTCACCTCCAAAAGTTGCTTCACCACTCTACAAGTCGTACTCTCTGAATTATTCTTCTCCTTCTCCTTCTTATTCTTCTTTGCCGAGATCCGTGTCCTGTCCGCCGTCTGCCTCGTCATTGCCTGATGTTGATACTGTTTTGAAGAGGAGGAGGCCGGCGAGAATTGACGTGCCGACGATTGTGCCGTCCATCGGTTTTGGATTCGGAACTTTCGAGACGCCGGAGGTGATGGAGGAGGAAGGAGAAGGATATTCGGTTTATTGTAAAAGAGGAAGAAGACGGATTGCCATGGAGGATCGATTCTCAGCCACAGTTGGAATTCAAGGAGATTCTCGGCAGGCTTTCTTCGGAATTTTCGATGGACACGGAGGAGCACAAGTGGCGGAAATCGCAGCGAAAAGAATGAGCGAGAATGTAATCGATCAAGTAACGAGAAGAACCGAATCGGAACTCGAGGAAGCAATCAAAGACGGCTATCTGGCGACCGATCGGGAAGTATCGGAGCAAGGAGTCAGCGGCGGCGCCTGTTCCGCCACCGCATTGATACGGAACGGACATCTCGCAGTCTCGAACGTCGGCGATTGTCGCGCCGTGTTGAGTCGAAAGGGAAAGGCGGAAGCCCTAACCTCCGATCACCGGGCGTGTAGAGAAGACGAGAGAAATCGGATCGAAAAATCGGGCGGTTATGTAGACTGTTGCCGTGGGGCATGGAGAGTTCAAGGAACACTGGCTGTATCTCGAGCCATTGGAGACAAGCATCTGAAACAGTGGGTGATATCAGAGCCGGAGACGAGAGTAGTGAAGATCGAGGATGATTGCGATTACTTGATCCTTGCTTCTGATGGTCTTTGGGACAAGGTGAGTTTCGTTTCGTTTCAACAACTCTCATCCTCCTATACAATTTTTTTTCAAAAAATGTAA 1038 49.42 MHFHFIPFIFAKSNPSTKGNSMCAVAAPTTTTTTMTPLFSPPKVASPLYKSYSLNYSSPSPSYSSLPRSVSCPPSASSLPDVDTVLKRRRPARIDVPTIVPSIGFGFGTFETPEVMEEEGEGYSVYCKRGRRRIAMEDRFSATVGIQGDSRQAFFGIFDGHGGAQVAEIAAKRMSENVIDQVTRRTESELEEAIKDGYLATDREVSEQGVSGGACSATALIRNGHLAVSNVGDCRAVLSRKGKAEALTSDHRACREDERNRIEKSGGYVDCCRGAWRVQGTLAVSRAIGDKHLKQWVISEPETRVVKIEDDCDYLILASDGLWDKVSFVSFQQLSSSYTIFFQKM 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5994023 5995278 - CmoCh04G011740.1 Cmo04g01174 380149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01174 345 PANTHER PROTEIN PHOSPHATASE 2C 55 327 IPR015655 GO:0004722|GO:0006470
Cmo04g01174 345 Gene3D - 117 338 IPR036457 -
Cmo04g01174 345 CDD PP2Cc 122 327 IPR001932 -
Cmo04g01174 345 ProSitePatterns PPM-type phosphatase domain signature. 154 162 IPR000222 GO:0043169
Cmo04g01174 345 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 55 327 - -
Cmo04g01174 345 SMART PP2C_4 113 340 IPR001932 -
Cmo04g01174 345 Pfam Protein phosphatase 2C 129 327 IPR001932 -
Cmo04g01174 345 SUPERFAMILY PP2C-like 122 327 IPR036457 -
Cmo04g01174 345 ProSiteProfiles PPM-type phosphatase domain profile. 122 345 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01174 Cmo04g00143 ECH
Cmo04g00143 Cmo04g01174 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00143 Cmo-Chr4:736275 Cmo04g01174 Cmo-Chr4:5994023 9.45E-166 dispersed
Cmo04g01174 Cmo-Chr4:5994023 Cmo15g00018 Cmo-Chr15:135022 1.04E-75 dispersed
Cmo13g00046 Cmo-Chr13:280223 Cmo04g01174 Cmo-Chr4:5994023 2.05E-14 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01174 K17506 - csv:101208170 414.846