Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01178 ATGGAATCTAAGTTTCAGAAGCTTAGAGATGGAGCTTTATTCTCTGCGAATTCGATCTTGCTTGAACTATCAGCCTCTGATGATGTAGATGGGTTCAAGAGAGAGGTGGAAGAAAAGGATTTGGATGTTGATGAACCAAGCTGCTGGTATGGAAGAGGAATTGGGTCAAAGAAGATGGGTTTTGAAGAAAGAACTCCACTTATGATCGCTGCTATGTATGGAAGCTCTAAGGTTGTCAAATACTTAATTGAGACAGGCAAGGTTGATATCAACAGGGCTTGTGGATCAGATATGACCACTGCCCTTCACTGTGCCTCTGCTGGTGGCTCTGGTTCTTCCCTTGAAACCATCAAGCTCTTGCTCGACGGATCGGCTGACGTCAATTGCGTCGATGCGAACGGGAGAAAACCTGTTGATTTGATAGTTTCAGCTTGCAGGATGGTGTGTTATTCAGGAAGGAAAGCTATGGAGATGTTGTTGAGAGGAGATGGTATGGCTGGGGTAGGTGATCTGAGCCTTTTCCTAGAAGAAGACCAGCAGAAGATCTCAGCTTCCCTGTCTGCAAAAGAAGGAAGTGACAAGAAAGAGTATCCTGTTGATATATCGCTGCCCGACATCAACAGCGGGATATATGGCACTGATGATTTCAGGATGTATACTTTCAAAGTGAAGCCTTGTTCGAGGGCGTATTCGCACGATTGGACCGAGTGTCCTTTCGTTCATCCTGGCGAGAATGCTAGGCGTAGAGACCCCAAGAAGTACCCTTATAGTTGTGTCCCGTGCCCTGAATTCCGAAAGGGGGCTTGTCCTAAGGGAGATTCCTGTGAGTATGCACATGGTGTCTTTGAGTCTTGGCTCCACCCTGCTCAATACCGAACCCGGCTCTGCAAGGATGAGACTGGCTGCACAAGGAAGGTCTGCTTCTTTGCTCACAGACCTGATGAGTTGCGCCCTGTATATGCATCGACAGGCTCAGGCATGCCTTCGCCTAGGTCTCTTTCAAGCAGTGCTGCAGATATGTCTACCATGAGCCCGTTGGCTCTTGGTTCATCGTCGTTGTCGTTGCCGACTGCTTCAACGCCTCCCATGTCTCCCTTAGCATCGGTGTCTTCCCCTAAAAATGGGAACTTGTGGCAGAACAAGATTAACCTTACTCCTCCTGCTCTGCAGCTCCCTGGTAGTCGGTTGAAGGCGACCTTGAGTGCAAGAGATTTGGATTTAGAGATGGAATTGCTTGGATTAGAAAAGAACGTGAGCCAAATGCAGCATCAACAACAGTTGATCGACGAGATATCCCGGCTCTCCGCTCCTTCTTACTGGAGTGCAGACATAAGCAGGAGCGCAGAGTTGAAGCCATCAAACCTTGATGACATGTTTGGATCATTAGATTCTTCCTTGTTGTCTCAGTTGCAGGGCACGTCGCTAAAAACGCCAATCTCGGCTCAAGTTCAATCTCCAACCGGGCTGCAGATGCGCCAAAACATGAACCAACTCCGTGCGAGTTACCCAGCTAACTTATCATCCTCACCTGTAAAGAAACCCTCTTCATTTGGCTTTGATTCATCAAGTGCAGTGGCAGCGGCTGTGATGAACTCAAGGTCTGCAGCCTTTGCAAAACGAAGCCAGAGTTTCATCGATCGAGCTGCAGTGACCCGCCATCCTGGGCTTACTGGAGCTGCAAATTCTGCAGCTACAATGTCTTCCCATCTCTCAGATTGGAACTCGCCCGATGGCAAACTAGACTGGGGAATGCAGGGCAACGATCTCAACAAACTCAAGAAATCTGCCTCGTTCGGGATCCGAAACAACAGCATGGGAACCCCCACGTTCGCTTCACCAGTAGAGGAGCCTGATGTCTCTTGGGTTAACTCCTTGGTGAAAGATGTTCCCTCGGACAGGTTCGGGATGTTCGGTGCAGAGAAACGAGCATACAACCTCAAAAGAGACATCAACGAGATGCTCCCATCCTGGATGGAGCAGCAGTTGTACGCAGAGCAGGAGCAGACAGTGGCATAA 2016 49.01 MESKFQKLRDGALFSANSILLELSASDDVDGFKREVEEKDLDVDEPSCWYGRGIGSKKMGFEERTPLMIAAMYGSSKVVKYLIETGKVDINRACGSDMTTALHCASAGGSGSSLETIKLLLDGSADVNCVDANGRKPVDLIVSACRMVCYSGRKAMEMLLRGDGMAGVGDLSLFLEEDQQKISASLSAKEGSDKKEYPVDISLPDINSGIYGTDDFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYPYSCVPCPEFRKGACPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHRPDELRPVYASTGSGMPSPRSLSSSAADMSTMSPLALGSSSLSLPTASTPPMSPLASVSSPKNGNLWQNKINLTPPALQLPGSRLKATLSARDLDLEMELLGLEKNVSQMQHQQQLIDEISRLSAPSYWSADISRSAELKPSNLDDMFGSLDSSLLSQLQGTSLKTPISAQVQSPTGLQMRQNMNQLRASYPANLSSSPVKKPSSFGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRAAVTRHPGLTGAANSAATMSSHLSDWNSPDGKLDWGMQGNDLNKLKKSASFGIRNNSMGTPTFASPVEEPDVSWVNSLVKDVPSDRFGMFGAEKRAYNLKRDINEMLPSWMEQQLYAEQEQTVA 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6019943 6021958 - CmoCh04G011780.1 Cmo04g01178 380153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01178 671 SMART c3hfinal6 290 313 IPR000571 GO:0046872
Cmo04g01178 671 SMART c3hfinal6 255 281 IPR000571 GO:0046872
Cmo04g01178 671 Gene3D - 16 157 IPR036770 -
Cmo04g01178 671 Gene3D - 256 318 - -
Cmo04g01178 671 ProSiteProfiles Ankyrin repeat profile. 62 86 IPR002110 GO:0005515
Cmo04g01178 671 PANTHER UNKEMPT FAMILY MEMBER 13 669 IPR045234 -
Cmo04g01178 671 ProSiteProfiles Zinc finger C3H1-type profile. 255 282 IPR000571 GO:0046872
Cmo04g01178 671 SUPERFAMILY Ankyrin repeat 53 144 IPR036770 -
Cmo04g01178 671 SMART ANK_2a 97 129 IPR002110 GO:0005515
Cmo04g01178 671 SMART ANK_2a 62 92 IPR002110 GO:0005515
Cmo04g01178 671 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 280 IPR000571 GO:0046872
Cmo04g01178 671 ProSiteProfiles Ankyrin repeat profile. 97 132 IPR002110 GO:0005515
Cmo04g01178 671 MobiDBLite consensus disorder prediction 319 340 - -
Cmo04g01178 671 ProSiteProfiles Ankyrin repeat region circular profile. 62 86 - -
Cmo04g01178 671 MobiDBLite consensus disorder prediction 325 340 - -
Cmo04g01178 671 Pfam Ankyrin repeats (3 copies) 60 130 IPR002110 GO:0005515
Cmo04g01178 671 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 13 669 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01178 Cmo04g00148 ECH
Cmo04g00148 Cmo04g01178 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01178 Cmo-Chr4:6019943 Cmo20g00367 Cmo-Chr20:1811451 0 dispersed
Cmo16g00239 Cmo-Chr16:1052957 Cmo04g01178 Cmo-Chr4:6019943 2.05E-51 transposed
Cmo02g00746 Cmo-Chr2:4682284 Cmo04g01178 Cmo-Chr4:6019943 0 wgd
Cmo04g00148 Cmo-Chr4:775143 Cmo04g01178 Cmo-Chr4:6019943 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9597 PF12796 Ank_2 3.70E-10 CL0465 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01178 - - csv:101203102 1147.5