Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01181 ATGGCGTCAATCTCTTCCAGCCTTCGCACCGTCGAAGATATCTTCAAGGATTACAACGCTCGACGCACAGGCCTTGTGCGAGCCCTCACTTATGATGTTGATATGTTCTACTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTATGGACATCCGGATGAGTCTTGGGAGGTGACTTTGCCTGCCGAGGAAGTTCCATCCGAGCTCCCTGAGCCCGCGTTGGGTATCAATTTTGCAAGAGATGGGATGAAGCGCAGAGACTGGCTTTCGCTGGTGGCTGTGCACAGCGATTGTTGGTTGCTTTCAGTGGCGTTCTATTTTGGTGCTCGACTCAACCGCAATGAGCGGAAGCGGCTGTTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCGTCTGGAAGGAAAGCTGTTAAAGACAAACCCAGTATGGACAGTGGAAGTAAATCCAGAAACAGCACAAAGAGATCACTGGACGGGTCGATTAGAAACAGCAATCCAAAGCTACTGGATGAGAGTTATGGAGAGGAGGAAGACGAGCATGGCGATACTCTGTGTGGGAGCTGTGGAGGGAACTACAACGCAGATGAGTTTTGGATTGGATGTGACATATGCGAGAGGTGGTTCCATGGAAAATGTGTGAGGATAACACCAGCCAAGGCAGACAATATCAAGCAATACAAATGCCCCTCTTGCAGCACAAAGAGAGGAAGACAGTAG 726 48.62 MASISSSLRTVEDIFKDYNARRTGLVRALTYDVDMFYSLCDPEKENLCLYGHPDESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGARLNRNERKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRSLDGSIRNSNPKLLDESYGEEEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKADNIKQYKCPSCSTKRGRQ 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6039376 6046345 - CmoCh04G011810.1 Cmo04g01181 380156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01181 241 SUPERFAMILY FYVE/PHD zinc finger 176 238 IPR011011 -
Cmo04g01181 241 MobiDBLite consensus disorder prediction 141 176 - -
Cmo04g01181 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 236 IPR013083 -
Cmo04g01181 241 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 1 241 - -
Cmo04g01181 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Cmo04g01181 241 Pfam Alfin 10 135 IPR021998 GO:0006355|GO:0042393
Cmo04g01181 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Cmo04g01181 241 PANTHER CPG BINDING PROTEIN 1 241 IPR045104 GO:0006355|GO:0042393
Cmo04g01181 241 CDD PHD_AL_plant 187 237 IPR044104 -
Cmo04g01181 241 Pfam PHD-finger 188 236 IPR019787 -
Cmo04g01181 241 MobiDBLite consensus disorder prediction 149 170 - -
Cmo04g01181 241 SMART PHD_3 187 235 IPR001965 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01181 Cmo04g00150 ECH
Cmo04g00150 Cmo04g01181 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01181 Cmo-Chr4:6039376 Cmo08g00755 Cmo-Chr8:4772591 1.27E-104 dispersed
Cmo14g00058 Cmo-Chr14:290148 Cmo04g01181 Cmo-Chr4:6039376 4.75E-141 wgd
Cmo04g00150 Cmo-Chr4:788242 Cmo04g01181 Cmo-Chr4:6039376 4.39E-171 wgd
Cmo04g01181 Cmo-Chr4:6039376 Cmo06g00221 Cmo-Chr6:1192609 1.52E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9598 PF12165 Alfin 1.20E-67 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01181 - - csv:101211934 485.337