Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01183 ATGACGAAATTACCCTCTCCGACCGTCGCCGCCGTCTTCACCCTCATCGCCGTTGTTTTCCCGCTGTTCCCGGCGATTCAAGCTCTCGGTTCAGCCTCCACCCTTGCCGTCAGTTACGGCTCGAGAACTGTTTGTGGCATCGTCGCCGAGCAGCTGACCCAAAGGATTTTGTGCTTCCGTGACGGTCAAAATATTTTTGTTGAACCTCATTTCTCCTTTTCTGCCGTCTCCGGCGGTCGGAATATCTTCTGCGGTTTAAGGTCTAGCGGCGACATCCTCATTTGCTGGGAGTTCGACTCAACCACCGCTGCGTTTCCCTGGAGAAGAATCTATAACAATACCTCCATTTTTCTCGAGAATCTCGCGGTCGGCGACGATCAAATCTGTGCCACGGCTGTCGGCGCCGGCAATGTAACTTGCTGGCGAGAAGGTAACAAAGCTAAAGTTGGATTTTCTTCTATTCAATTCGATTCAATCTCTTCTGGGTATGGATTTTCTTGCGGAATTTTAAAGGGTAATCAATTCGTAAGATGTTGGGGTCGAAATTCGTCGATTGCAAACGTAATCGAAAATGGGTTTAGAAATATTTCAATGGCGACCATCGTCGCCGGCGGGTATCATGCTTGTGGATTGAATATCTCTGGTGGGTTGGTTTGTAAAGGGAACAACGATTTTGGGCAGCTGGATTTTCCTTCAAGTTTAGCCATGGAGTTCTCTGAATTGGCACTCGGTGAACGCCATAGCTGTGGGATTTTGGTCTCGAATCGATCGGTGGTCTGTTGGAGTGGTGATTTGAGATTCTCTGTTGATTCGATTCGAGAAACTTCTTTTGAGTTAATTTCTTCTGGATCGGATTTTGTTTGTGGTTTAACGACAAGCAATTTCTCTGTTCTTTGTTGGGGGCCTGGTTGGTCCAATGATTCTTCACTTTCTCTTCCTAAGATTCTTCCTGGTCCTTGTGTTCAATCTTCTTGTAGTGATTGTGGGGTTTATCCTCTGTCTCAAACGCTCTGTTCCGGTTCTGGGAATGTCTGTGGTCGCTGTTTGTTTAATGTTTCAACGCCGCTGCCATCGCCTCCACCGCCGCCGCCAACGGTGGCGGCCCCATCACCTCCTTCGGCGGGTTTGAAAAGGGGTTTGTTGGCATTTGCTATTGTGGGCTCTGTTGGGGCATTTGCTGGGATTTGTACTGTTCTTTACTGTTTATGGACTGGTGTTTGTTTTAAGCATAAGAAGATACATAACTCTGTTCAGCCCACCATCACTAGAGCTGCTAGCTCGACAACATCGAATACGAACAACAGCCCGGTGTCGAGGTCGTCGACAATTCGGCGACAGGGGTCCCGGATAATGCGGAGACAGAGGAGTGGGACATCGTCGAAGCACGCAGATAAAGCAGAAGAATTCACTCTATCTGAGCTTGCTAAGGCTACCAATGAGTTTTCCCCTGATAACAAGATCGGGCAGGGAAGCTTTGGCGTTGTGTACCGGGGGAAACTGTTCGACGGTCGGGACGTTGCGATAAAGAGAGGTGAAACGGGGTCGAAAACTAAGAAGTTTCAGGAGAAGGAGAGTGCTTTTGATTCAGAAGTGGCATTCTTGTCTAGGCTTCATCACAAGCATTTGGTTAGGCTTGTTGGGTATTGTGAGGAGAAAGATGAACGGCTGTTGGTTTATGAGTATATGAAAAATGGTGCACTTTACAATCATGTTCATGACAAGAACAACACTGATAAAGGGAGCAGTGTTATAAACTCTTGGAAAATGAGGATCAAAATTGGTTTAGATGCAGCTAGAGGTATTGAATATCTTCATAACTATGCAGTTCCTCCCATAATCCATAGAGATATCAAATCATCCAACATTCTCCTCGACTCGAATTGGACAGCAAGAGTGTCGGATTTCGGGTTGTCGTTAATGAGTCCAGGGTCAGGCTGTGACTACCAACCAACCAAGGCAGCTGGGACGGTTGGTTACATTGATCCTGAATACTATGGACTCAATGTTTTGACTGCTAAGAGTGATGTGTATGGGCTTGGTGTGGTGTTGTTGGAGCTTTTGACAGGGAAGAGAGCTATATTCAAAGACAATGAACAAGGCGGGACACCGGTGAGCGTGGTCGATTATGCAGTGCCTGTCATTATGGTTGGAGAACTGGCGAAGATTTTGGATCGGAGAGTCGGGCCACCGCATATCAATGAAGCAGAGGCTGTGGAGCTGGTGGCTTACACAGCGATGCACTGCGTGCATTTGGAAGGGAAAGATCGGCCAACGATGACCGACGTTGTCGCTAATTTGGAACGAGCTTTGAATCTCTGTGATGATAGCCCTGGTAGCATCTCTAGTGGTGGAATTTCCATTGTTTCAGAGTGA 2373 47.37 MTKLPSPTVAAVFTLIAVVFPLFPAIQALGSASTLAVSYGSRTVCGIVAEQLTQRILCFRDGQNIFVEPHFSFSAVSGGRNIFCGLRSSGDILICWEFDSTTAAFPWRRIYNNTSIFLENLAVGDDQICATAVGAGNVTCWREGNKAKVGFSSIQFDSISSGYGFSCGILKGNQFVRCWGRNSSIANVIENGFRNISMATIVAGGYHACGLNISGGLVCKGNNDFGQLDFPSSLAMEFSELALGERHSCGILVSNRSVVCWSGDLRFSVDSIRETSFELISSGSDFVCGLTTSNFSVLCWGPGWSNDSSLSLPKILPGPCVQSSCSDCGVYPLSQTLCSGSGNVCGRCLFNVSTPLPSPPPPPPTVAAPSPPSAGLKRGLLAFAIVGSVGAFAGICTVLYCLWTGVCFKHKKIHNSVQPTITRAASSTTSNTNNSPVSRSSTIRRQGSRIMRRQRSGTSSKHADKAEEFTLSELAKATNEFSPDNKIGQGSFGVVYRGKLFDGRDVAIKRGETGSKTKKFQEKESAFDSEVAFLSRLHHKHLVRLVGYCEEKDERLLVYEYMKNGALYNHVHDKNNTDKGSSVINSWKMRIKIGLDAARGIEYLHNYAVPPIIHRDIKSSNILLDSNWTARVSDFGLSLMSPGSGCDYQPTKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKDNEQGGTPVSVVDYAVPVIMVGELAKILDRRVGPPHINEAEAVELVAYTAMHCVHLEGKDRPTMTDVVANLERALNLCDDSPGSISSGGISIVSE 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6053883 6056255 + CmoCh04G011830.1 Cmo04g01183 380158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01183 790 Pfam Protein kinase domain 484 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01183 790 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 8 786 - -
Cmo04g01183 790 SMART serkin_6 481 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01183 790 SUPERFAMILY RCC1/BLIP-II 58 303 IPR009091 -
Cmo04g01183 790 MobiDBLite consensus disorder prediction 423 445 - -
Cmo04g01183 790 Gene3D Transferase(Phosphotransferase) domain 1 562 776 - -
Cmo04g01183 790 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 8 786 IPR044815 GO:0004674
Cmo04g01183 790 ProSiteProfiles Protein kinase domain profile. 481 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01183 790 ProSitePatterns Protein kinases ATP-binding region signature. 487 509 IPR017441 GO:0005524
Cmo04g01183 790 Gene3D Phosphorylase Kinase; domain 1 441 561 - -
Cmo04g01183 790 Pfam Regulator of chromosome condensation (RCC1) repeat 200 227 - -
Cmo04g01183 790 MobiDBLite consensus disorder prediction 423 464 - -
Cmo04g01183 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
Cmo04g01183 790 Gene3D - 186 317 IPR009091 -
Cmo04g01183 790 Gene3D - 39 185 IPR009091 -
Cmo04g01183 790 SUPERFAMILY Protein kinase-like (PK-like) 461 766 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01183 Cmo04g00153 ECH
Cmo04g00153 Cmo04g01183 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01183 Cmo-Chr4:6053883 Cmo09g01236 Cmo-Chr9:10604944 6.78E-135 dispersed
Cmo13g00053 Cmo-Chr13:316316 Cmo04g01183 Cmo-Chr4:6053883 0 wgd
Cmo04g00153 Cmo-Chr4:802226 Cmo04g01183 Cmo-Chr4:6053883 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74268 PF00069 Pkinase 9.20E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01183 - - bhj:120081574 1306.97