Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01189 ATGGCCTTTTTCTTTTTTCTCCTCTTCTTTTCCTCTGTTTTCGCCTCTTCTCTGTTTCTCTTTCTCTTTCTCCGCCCGGCGAGATTCCGGCGTGTCAGGCTGCCACCGGGGACACTCGGCCTTCCCTTCATCGGAGAGTCTCTTCAACTCATCTCCGCTTACAAGACCGAGAACCCCGAACCCTTCATCGACGAGCGTGTCCGACGATTCGGACCGGTTTTTACAACCCACGTGTTTGGAGAGCCGACGGTTTTCTCGGCGGATTGGGAGACGAACCGGTTCATTCTTCAGAATGAGGAGAAGCTTTTCGAGTGCAGCTACCCGGGTTCGATTTCCAACCTGCTTGGGAAGCACTCTTTGTTGGTGATGAAAGGGAGTTTACATAAGAGAATGCATTCTTTGACTATGAGCTTCGGGAATTCTTCCATTATTAGGGATCATCTTTTGGTCGATGTGGACCGGTTGATTCGCCTCAATTTGGAGTCTTGGACCGGCCGGATCTTCCTCATGGAGGAGGCTAAGAAGATAACGTTTGAGTTAGCAGTGAAGCAATTGATGAGCTTTGATCGGTGTGAATGGACTCAAAATCTGATGAAAGAATACCTTCTTGTCATCGAAGGCTTTTTTACCGTCCCTTTCCCTCTCTTCTCCTCTACTTACCGTCGAGCCATCCAGGCACGTGAGAAAGTGGCGGAGCAATTGGGGACGGTGGTGCGGCAGCGGAGGAAAGAGAGCAAGGAGGGAGAGAGGAAGAAGGACATGCTTGGAGCGCTCCTCGCCGGAGAAGACGCCCTCTCCGACGACCAAATAGTCGATTTCTTATTGGCTCTACTGGTCGCTGGATATGAAACCACGTCAACCACCATGACCCTCGCCGTCAAGTTTCTCACCGAGACGCCGCTGGCTTTGGCCCAATTACAGGAAGAGCACCACCAAATCAAAGCAAGGAACAAGCAATCACACCAACGCCTTCAATGGAATGATTACAAGTCCATGCCTTTCACCCAATGTGTTGTCAATGAAACATTACGAGTTGCCAACATCATCAGCGGCGTGTTTAGGAGGGCAATCACCGACGTAAATATCAAAGGGTATACAATTCCAAAGGGATGGAAGGTTTTTGCGTCATTTCGTGCAGTACATTTGGACCATGATCACTTCAAAGATGCTCGCTCTTTTAACCCATGGAGATGGCAAAAGACTAGCTCCGGCTCCACCACGCTTAATGCTTTTACGCCCTTCGGAGGAGGTCCCAGACTATGCCCTGGTTATGAGCTTGCCAGAGTCGAGCTCTCTGTTTTCCTTCATCATCTCGTCACTCAATTCAGTTGGGTTCCAGCAGAAGATGATAAGTTGGTATTTTTCCCAACAACAAGAACACAGAAGCGCTATCCTATCTATGTGACGCGGAAGAATGACACTACACACTCATCCACCACACACATTAAGGGAGGCGAGGCGAGTCGAGTCGAGTCAGGTTTCAATATGTAG 1491 49.43 MAFFFFLLFFSSVFASSLFLFLFLRPARFRRVRLPPGTLGLPFIGESLQLISAYKTENPEPFIDERVRRFGPVFTTHVFGEPTVFSADWETNRFILQNEEKLFECSYPGSISNLLGKHSLLVMKGSLHKRMHSLTMSFGNSSIIRDHLLVDVDRLIRLNLESWTGRIFLMEEAKKITFELAVKQLMSFDRCEWTQNLMKEYLLVIEGFFTVPFPLFSSTYRRAIQAREKVAEQLGTVVRQRRKESKEGERKKDMLGALLAGEDALSDDQIVDFLLALLVAGYETTSTTMTLAVKFLTETPLALAQLQEEHHQIKARNKQSHQRLQWNDYKSMPFTQCVVNETLRVANIISGVFRRAITDVNIKGYTIPKGWKVFASFRAVHLDHDHFKDARSFNPWRWQKTSSGSTTLNAFTPFGGGPRLCPGYELARVELSVFLHHLVTQFSWVPAEDDKLVFFPTTRTQKRYPIYVTRKNDTTHSSTTHIKGGEASRVESGFNM 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6085173 6089885 - CmoCh04G011890.1 Cmo04g01189 380164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01189 496 Pfam Cytochrome P450 209 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01189 496 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 414 423 IPR017972 GO:0005506|GO:0016705
Cmo04g01189 496 SUPERFAMILY Cytochrome P450 28 470 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01189 496 PANTHER CYTOCHROME P450 26 12 470 - -
Cmo04g01189 496 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01189 496 PRINTS E-class P450 group I signature 269 286 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01189 496 PRINTS E-class P450 group I signature 289 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01189 496 PRINTS E-class P450 group I signature 336 354 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01189 496 PRINTS E-class P450 group I signature 376 400 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01189 496 PRINTS E-class P450 group I signature 411 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01189 496 PRINTS E-class P450 group I signature 421 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01189 496 Coils Coil 303 323 - -
Cmo04g01189 496 Gene3D Cytochrome P450 24 471 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01189 496 PRINTS P450 superfamily signature 280 297 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01189 496 PRINTS P450 superfamily signature 337 348 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01189 496 PRINTS P450 superfamily signature 412 421 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01189 496 PRINTS P450 superfamily signature 421 432 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01189 496 MobiDBLite consensus disorder prediction 475 496 - -
Cmo04g01189 496 PANTHER CYTOCHROME P450 90A1 12 470 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01189 Cmo-Chr4:6085173 Cmo07g00457 Cmo-Chr7:2092142 1.16E-119 dispersed
Cmo04g02940 Cmo-Chr4:20826192 Cmo04g01189 Cmo-Chr4:6085173 2.76E-84 dispersed
Cmo09g00944 Cmo-Chr9:4959270 Cmo04g01189 Cmo-Chr4:6085173 3.03E-75 dispersed
Cmo04g00159 Cmo-Chr4:827053 Cmo04g01189 Cmo-Chr4:6085173 2.83E-10 transposed
Cmo04g00838 Cmo-Chr4:4170265 Cmo04g01189 Cmo-Chr4:6085173 1.26E-120 transposed
Cmo04g02798 Cmo-Chr4:20108482 Cmo04g01189 Cmo-Chr4:6085173 5.42E-90 transposed
Cmo08g01269 Cmo-Chr8:7988253 Cmo04g01189 Cmo-Chr4:6085173 1.84E-09 transposed
Cmo04g00158 Cmo-Chr4:826506 Cmo04g01189 Cmo-Chr4:6085173 7.87E-40 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01189 K09588 - csv:101216594 843.958