Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01191 ATGTCCAAAGCAGCACCGATCAAGGCGTGTGATGTGTTGCGACAGCACTGGCAACGGCGACGGCATCGGCAAATGGCTTCCGTATATCGTGATCGGACGTCGGAGTTTCGGTCACTGTCGGAGACGCTGAAGAAGATCGGCGTAGCCACAGCCGCCGTCAATTTAGCTCAAAATGAACCATCGGTGTCCACGCCCTCCAGATCGCCGGCTATTTTACGATCGGAATTCAGCAAGAAGGCCTCGCGTATTGGATTGGGAATCCAAGAAACCTCTCAGAAGATTGTGAGGCTTGCTCAGTTGGCAAAAAGATCATCAATGTTTGATGACCCAATCAGGGAAATTCAGGAAATGACTGCTTTGATTAAGAATGATATTACCTCCTTGAATGTAGCTATCACAGATTTGCAAACAATCCAGAACATGGAGATAGCAGAGGGGAATTATTCAGAGGATAGAGTTGTTCATTCAACAGCTGTCTGTGATGACCTGAAGAGCAGACTTATGGGAGCTACAAAACGGCTTCAAGATGTGCTAACTACAAGAACAGAGAATATCAAGGCCAATGAGAGCCGGAGACAAATATTTTCTGCAAATGCAACCAGAGAAAGTCCTTTTCAAAATCAAGCCAAAACTGTAACGCAACCTCCACCTTGGTCAAGTAACACATCTGGAAGTGCCCAATCATCTTTATTATCATCAAATGGAGCTCAAGCTGGGGGTCAATTGAGACGAAGGTTAGCTGTTGAGAACACCCCATCACAGCAAATGGAGTTGTCAATGTTACAGCAGATGGTTCCTAGGCAGGAAAATTATTCCCAAAGTCGTGCCGTTGCTCTCCATAATGTGGAATCCACCATTTCAGAACTCAGTGGAATTTTTACACATCTTGCCACAATGGTAGCACATCAAGGAGAACTTGCTATCAGGATTGATGACAATATGGATGAATCATTGGCAAACGTAGAAGGTGCTCGGAGTGCTCTTTTAAGGCATCTTAACCAGATATCATCAAATAGATGGCTTCTTATAAAACTATTTGCCATTTTGATAATCTTCTTGATGCTCTTTATTTTCTTGGCATAA 1083 43.95 MSKAAPIKACDVLRQHWQRRRHRQMASVYRDRTSEFRSLSETLKKIGVATAAVNLAQNEPSVSTPSRSPAILRSEFSKKASRIGLGIQETSQKIVRLAQLAKRSSMFDDPIREIQEMTALIKNDITSLNVAITDLQTIQNMEIAEGNYSEDRVVHSTAVCDDLKSRLMGATKRLQDVLTTRTENIKANESRRQIFSANATRESPFQNQAKTVTQPPPWSSNTSGSAQSSLLSSNGAQAGGQLRRRLAVENTPSQQMELSMLQQMVPRQENYSQSRAVALHNVESTISELSGIFTHLATMVAHQGELAIRIDDNMDESLANVEGARSALLRHLNQISSNRWLLIKLFAILIIFLMLFIFLA 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6096388 6099215 - CmoCh04G011910.1 Cmo04g01191 380166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01191 360 PANTHER SYNTAXIN 27 359 IPR045242 -
Cmo04g01191 360 ProSitePatterns Syntaxin / epimorphin family signature. 275 314 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cmo04g01191 360 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 269 331 IPR000727 -
Cmo04g01191 360 PANTHER SYNTAXIN-31 27 359 - -
Cmo04g01191 360 CDD SNARE_syntaxin5 272 357 - -
Cmo04g01191 360 MobiDBLite consensus disorder prediction 197 236 - -
Cmo04g01191 360 Pfam SNARE domain 306 357 IPR000727 -
Cmo04g01191 360 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 30 45 IPR021538 -
Cmo04g01191 360 Gene3D - 73 324 - -
Cmo04g01191 360 SUPERFAMILY t-snare proteins 73 324 IPR010989 GO:0016020|GO:0016192
Cmo04g01191 360 SMART tSNARE_6 264 331 IPR000727 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00161 Cmo04g01191 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01191 Cmo-Chr4:6096388 Cmo12g00252 Cmo-Chr12:1636967 6.34E-82 dispersed
Cmo04g00161 Cmo-Chr4:833822 Cmo04g01191 Cmo-Chr4:6096388 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01191 K08490 - csv:101213786 524.242