Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01196 ATGGAAGGGAAGGAAGAAGATGTAAGACTTGGAGCCAACAAGTTCAACGAGAGACAGCCGATCGGAACCGCGGCACAGAGTCAAGACGACGCCAAGGACTACCAGGAGCCACCGCCGGCGCCGCTTTTCGAGCCGGACGAGCTCACTTCATGGTCCTTTTACAGAGCCGGAATCGCCGAGTTTTTCGCCACTTTCCTCTTCCTCTACATCACTGTTTTGACCGTCATGGGTGTCGTCCGGTCCAATGAAGCCAACGGCAACACTTGTAAGACCGTCGGGATCCAGGGGATCGCTTGGGCTTTCGGCGGTATGATTTTTGCTCTGGTTTACTGTACCGCTGGAATCTCCGGTGGGCACATTAACCCGGCAGTGACTTTCGGGCTGTTTCTGGCCAGGAAGCTGTCGTTGACAAGAGCGATTTTCTACATGGTGATGCAGTGCCTTGGCGCCATCTGCGGGGCCGGTGTGGTGAAGGGATTCCAACCCAATCCCTACAACAGGCTCGGCGGCGGAGCTAACATGGTGAGCAAGGGGTACACCAAAGGCGACGGCCTTGGCGCTGAGATTGTGGGCACATTTATCCTTGTTTACACCGTCTTCTCCGCCACTGACGCCAAACGTAGCGCCAGAGACTCGCATGTTCCAATTTTGGCACCCCTACCAATTGGGTTCGCAGTGTTTCTAGTCCACTTGGCCACCATCCCGATCACCGGCACCGGCATTAACCCTGCCCGGAGTTTGGGAGCCGCCATAATCTACAACAACGAGAAAGCCTGGGATGACCACTGGATTTTCTGGGTGGGACCATTCATCGGCGCTGGTCTAGCCGCTCTGTACCACCAAGTTGTGATCCGAGCCATCCCCTTCAAGTCCAAGTGA 879 55.75 MEGKEEDVRLGANKFNERQPIGTAAQSQDDAKDYQEPPPAPLFEPDELTSWSFYRAGIAEFFATFLFLYITVLTVMGVVRSNEANGNTCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQCLGAICGAGVVKGFQPNPYNRLGGGANMVSKGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNNEKAWDDHWIFWVGPFIGAGLAALYHQVVIRAIPFKSK 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6112222 6113521 + CmoCh04G011960.1 Cmo04g01196 380171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01196 292 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 292 IPR034294 -
Cmo04g01196 292 Pfam Major intrinsic protein 47 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g01196 292 Gene3D Glycerol uptake facilitator protein. 40 291 IPR023271 -
Cmo04g01196 292 TIGRFAM MIP: MIP family channel proteins 59 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g01196 292 SUPERFAMILY Aquaporin-like 47 285 IPR023271 -
Cmo04g01196 292 MobiDBLite consensus disorder prediction 1 39 - -
Cmo04g01196 292 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g01196 292 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g01196 292 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g01196 292 PRINTS Major intrinsic protein family signature 187 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g01196 292 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g01196 292 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g01196 292 PANTHER AQUAPORIN PIP1-4-RELATED 1 292 - -
Cmo04g01196 292 ProSitePatterns MIP family signature. 119 127 IPR022357 -
Cmo04g01196 292 CDD MIP 55 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00163 Cmo-Chr4:841489 Cmo04g01196 Cmo-Chr4:6112222 0 dispersed
Cmo04g00164 Cmo-Chr4:843579 Cmo04g01196 Cmo-Chr4:6112222 0 dispersed
Cmo04g01194 Cmo-Chr4:6106583 Cmo04g01196 Cmo-Chr4:6112222 0 dispersed
Cmo04g01196 Cmo-Chr4:6112222 Cmo15g01298 Cmo-Chr15:8913115 0 dispersed
Cmo04g01195 Cmo-Chr4:6109539 Cmo04g01196 Cmo-Chr4:6112222 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01196 K09872 - csv:101215145 568.155