Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01239 ATGGCTAATCGATGGTGGGCTGAAAACATACCCACCACCACGGACAGCAGCACCAGCAACCCTTATTCGACTCCATTAAAGCAAAGCATAGAAGCTGTCGATGAAGAGAATAACTCCGGCGGCCATGAGAGAGCCGAACCAGGCACCAGCTCCAGCACGCGCCGTCCACGTGGTCGGCCACCGGGATCCAAAAACAAGCCGAAGCCGCCAGTGGTGGTCACGAAAGAGAGCCCCGATGCTCTCCGGAGCCACGTTTTAGAAATCGGCAGCGGCAGCGATATCGTCGAAAGCATCTCAAACTTCGCCCAACGCCGTCAGCGAGGAGTTTCGGTTCTCAGTGGAAATGGGGTCGTCGCCAATGTCACTCTCCGGCATCCGGCAGCCCCTAGCGGTGTTATTACGCTACAGGGACGATTCGACATACTGTCGCTCTCTGGTGCATTTTTGCCTGCCCCAGCTCCACCGGGAGCTACTGGGTTAACTGTCTACTTGGCTGGCGGGCAGGGGCAAGTTGTTGGTGGCATTGTTGTCGGTGCCCTCGTTGCAACAGGTCCGGTCATCGTTATCGCTGCCACTTTCACCAACGCTACATTCGAACGGCTACCACTCGAGGAGGAGGAGGCAGCTGCTGGAGACAAGTCTGGAACAAGCCAGAACAATTCAACTTCTCAGAGCATGGGGGATCAACAGCAGCCTTCAATGGGCGTTTACAATATGGCTTCAAATTTGGTGCCAAATGGTCAGGTTTCTTCACATGATGTGTTTTGGAGTCCTCCTAGAGCCCCACCTCCATTTTAA 798 54.89 MANRWWAENIPTTTDSSTSNPYSTPLKQSIEAVDEENNSGGHERAEPGTSSSTRRPRGRPPGSKNKPKPPVVVTKESPDALRSHVLEIGSGSDIVESISNFAQRRQRGVSVLSGNGVVANVTLRHPAAPSGVITLQGRFDILSLSGAFLPAPAPPGATGLTVYLAGGQGQVVGGIVVGALVATGPVIVIAATFTNATFERLPLEEEEAAAGDKSGTSQNNSTSQSMGDQQQPSMGVYNMASNLVPNGQVSSHDVFWSPPRAPPPF 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6293402 6294199 + CmoCh04G012390.1 Cmo04g01239 380214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01239 265 MobiDBLite consensus disorder prediction 1 35 - -
Cmo04g01239 265 MobiDBLite consensus disorder prediction 205 265 - -
Cmo04g01239 265 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 14 264 - -
Cmo04g01239 265 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 195 IPR005175 -
Cmo04g01239 265 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 208 - -
Cmo04g01239 265 MobiDBLite consensus disorder prediction 1 78 - -
Cmo04g01239 265 PIRSF ESCAROLA 7 263 IPR014476 GO:0003680
Cmo04g01239 265 MobiDBLite consensus disorder prediction 212 253 - -
Cmo04g01239 265 MobiDBLite consensus disorder prediction 43 58 - -
Cmo04g01239 265 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 14 264 IPR014476 GO:0003680
Cmo04g01239 265 Gene3D - 81 210 - -
Cmo04g01239 265 CDD DUF296 82 165 IPR005175 -
Cmo04g01239 265 ProSiteProfiles PPC domain profile profile. 78 214 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01239 Cmo04g03067 CCT
Cmo04g01239 Cmo15g00111 CCT
Cmo04g00202 Cmo04g01239 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01239 Cmo-Chr4:6293402 Cmo06g01345 Cmo-Chr6:9973532 6.50E-73 dispersed
Cmo09g00019 Cmo-Chr9:120401 Cmo04g01239 Cmo-Chr4:6293402 4.39E-64 dispersed
Cmo12g01164 Cmo-Chr12:10534843 Cmo04g01239 Cmo-Chr4:6293402 2.13E-78 dispersed
Cmo15g00111 Cmo-Chr15:536548 Cmo04g01239 Cmo-Chr4:6293402 5.61E-70 wgd
Cmo04g00202 Cmo-Chr4:1004403 Cmo04g01239 Cmo-Chr4:6293402 6.47E-167 wgd
Cmo04g01239 Cmo-Chr4:6293402 Cmo04g03067 Cmo-Chr4:21427943 6.88E-68 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01239 - - csv:101217530 384.415