Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01240 ATGACTGTACTTAACTCTTATGATTCTTCTTCTTCTTCCTCTTCCTCTTCTTGTGGTGCCTGCAAGTTTCTAAGGCGAAAATGCAGCGATCAATGTGTATTTGCTCCTTTGTTCAGCTATGATGAAGCCACTTCCCATTTTGCGGCTGTTCATAAAGTGTTTGGAGCTAGTAATGTGTCCAAGCTTCTGTTGCATCTCCCCATGCATGTCCGAACCCAGGCTGCTATTACCGTCACTTATGAAGCTCTTGAGCGCATGCGAGATCCCGCCAATGGCTGCGTCTTGCATATCTTTGCGTTGCAGCAAGAGGTTGTGGCCAGCTTGCAGGAGGAGATACAAATTCTGGGGACCCAAATAGCCAACCTCCTCACCACCGGCGCCGCCATTTCAGCAGTGGAGAATCCATTTATAGAGATGAATGATTTTGGGATGAACTCAAACCATTGTCAAAATGAGCTGCCTTCTCAGCTGCTTCCCTACCGAACTTCTGATGATGTCCAAAAGGATGATCAAATGATATCTCCATTGCTTTGTTTAGGGGAAAAAGATGGAGGCTTTGGGTTCTGCCACTCAAATCATGTTGTTGAGACATCAGGCTTTGATGTTTCAGTTGAGGAGAATTTTGGTGGCTATCCATGGATACTTGGATGA 651 45.62 MTVLNSYDSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVVASLQEEIQILGTQIANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYRTSDDVQKDDQMISPLLCLGEKDGGFGFCHSNHVVETSGFDVSVEENFGGYPWILG 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6297067 6297787 - CmoCh04G012400.1 Cmo04g01240 380215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01240 216 PANTHER LOB DOMAIN-CONTAINING PROTEIN 33 14 156 - -
Cmo04g01240 216 PANTHER LOB DOMAIN CONTAINING PROTEIN 14 156 - -
Cmo04g01240 216 Pfam Lateral organ boundaries (LOB) domain 17 113 IPR004883 -
Cmo04g01240 216 ProSiteProfiles LOB domain profile. 16 119 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00203 Cmo04g01240 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01240 Cmo-Chr4:6297067 Cmo08g00921 Cmo-Chr8:6007802 3.24E-43 dispersed
Cmo04g00203 Cmo-Chr4:1007304 Cmo04g01240 Cmo-Chr4:6297067 1.03E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9602 PF03195 LOB 1.60E-30 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01240 K13945 - csv:101204875 300.056