Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01246 ATGTCGTCGATGGCGGCGGCGTCTTCCTACTGGTGCTACCGATGCAGTCGCTTTGTTAGGGTTTTCAATCAAGACTCTGTTGTGTGCCCCGATTGTAATAGTGGGTTTATCGAACAGATCGAGCATCCTTCGAGGTTGGTGGACGTGGAATCGGCTCCGCGGAGGAGGTTTCCGGCTGCGGCGATGTATATGATTGGCCACCGGTCGAATTCGGGACCGAATTTGGGATCTGGGATTCGGAGACCTCGGAGGAATGGTGGGGATCGCTCGCCCTTTAATCCTGTGATTGTTCTTCGGGGGCCGTCTGATGGGAGTGAAGGTGGAGAAAGTCGTCGGTTTGAGCTTTATTACGATGATGGCGGTGGTTCTGGCCTGAGACCGCTGCCACCGAGCATGTCGGAGTTTTTGTTGGGGTCTGGGTTTGATAGGCTTCTGGAGCAACTTTCTCAGATTGAAATGAACGGTATTGGGCGGTTTGAGAGCCCCCCGGCGTCCAAGGCTGCAATTGAGTCAATGCCCACGATTGAGATCTGTGAAAATCATTTGGAAACTGAGTCACACTGTGCTGTTTGCAAAGAAGCATTCGAATTGGGGACCGAAGCACGGGAGATGCCCTGTAAGCATATTTACCATTATGATTGCATTCTACCTTGGCTTTCGATTCGAAACTCTTGTCCAGTATGTCGTCACGAATTGCCTTCGGATAATCAGAACTCTCCGGATGCTGCAGAAAGTGGTGAAAATGAGGGGTCGGTGGCCTCAAATGGTGAAGAGAATGTGGGCTTAACCATTTGGAGGTTACCTGGCGGGGGGTTTGCGGTAGGGCGGTTTAATGGAGGCAGGAGAGGTGGGGAGAGAGAACTCCCGGTTGTTTACACTGAGGTGGATGGTGGTTTCACCAATGGTGGCGTCCCTAGAAGAATATCATTTGCTTCAAGAGGCAGAGGAAGGGAAAGAGGCGGATGGAGCCGAATAATTGGCAATATGTTTGCTTGCTTCAGGGGATCAATGAGGTCTATGTCATCTACTTCAAATTCCACCATCGATTCTAGTTCTTCAAGGAGTAGTAGACCACTCCCACATTTCACTACCGAGCCAAGGCGACGGCGCACATGGTCTATGGAAGTTAACAGTGGGACAATCAGCTGGTGA 1152 51.04 MSSMAAASSYWCYRCSRFVRVFNQDSVVCPDCNSGFIEQIEHPSRLVDVESAPRRRFPAAAMYMIGHRSNSGPNLGSGIRRPRRNGGDRSPFNPVIVLRGPSDGSEGGESRRFELYYDDGGGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEMNGIGRFESPPASKAAIESMPTIEICENHLETESHCAVCKEAFELGTEAREMPCKHIYHYDCILPWLSIRNSCPVCRHELPSDNQNSPDAAESGENEGSVASNGEENVGLTIWRLPGGGFAVGRFNGGRRGGERELPVVYTEVDGGFTNGGVPRRISFASRGRGRERGGWSRIIGNMFACFRGSMRSMSSTSNSTIDSSSSRSSRPLPHFTTEPRRRRTWSMEVNSGTISW 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6318459 6319610 + CmoCh04G012460.1 Cmo04g01246 380221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01246 383 MobiDBLite consensus disorder prediction 339 383 - -
Cmo04g01246 383 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 6 331 - -
Cmo04g01246 383 CDD RING-H2_RNF126_like 188 229 - -
Cmo04g01246 383 SMART ring_2 188 228 IPR001841 -
Cmo04g01246 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 235 IPR013083 -
Cmo04g01246 383 MobiDBLite consensus disorder prediction 72 109 - -
Cmo04g01246 383 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 6 331 - -
Cmo04g01246 383 MobiDBLite consensus disorder prediction 339 360 - -
Cmo04g01246 383 Pfam zinc-ribbon 9 40 IPR039525 GO:0061630
Cmo04g01246 383 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Cmo04g01246 383 MobiDBLite consensus disorder prediction 233 255 - -
Cmo04g01246 383 Pfam Ring finger domain 187 229 IPR001841 -
Cmo04g01246 383 Pfam Protein of unknown function (DUF1117) 260 357 IPR010543 -
Cmo04g01246 383 SUPERFAMILY RING/U-box 168 236 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01246 Cmo04g03071 CCT
Cmo04g01246 Cmo15g00107 CCT
Cmo04g03071 Cmo04g01246 ECH
Cmo04g01246 Cmo04g00206 ECH
Cmo04g01246 Cmo04g03071 ECH
Cmo04g01246 Cmo15g00107 ECH
Cmo04g00206 Cmo04g01246 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01246 Cmo-Chr4:6318459 Cmo07g01160 Cmo-Chr7:6225444 8.59E-43 dispersed
Cmo09g00797 Cmo-Chr9:4079832 Cmo04g01246 Cmo-Chr4:6318459 6.75E-34 dispersed
Cmo14g00126 Cmo-Chr14:554519 Cmo04g01246 Cmo-Chr4:6318459 2.95E-92 wgd
Cmo02g00789 Cmo-Chr2:4874518 Cmo04g01246 Cmo-Chr4:6318459 4.40E-124 wgd
Cmo20g00422 Cmo-Chr20:1993643 Cmo04g01246 Cmo-Chr4:6318459 1.98E-119 wgd
Cmo04g00206 Cmo-Chr4:1021063 Cmo04g01246 Cmo-Chr4:6318459 0 wgd
Cmo04g01246 Cmo-Chr4:6318459 Cmo06g00286 Cmo-Chr6:1428072 7.58E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01246 - K11982 csv:101218245 652.129