Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01251 ATGCCTGCCCTTGCGTTTACTCTTCCTGCTCTTCTCCTCTCCCTCCTCTCTCTCGGAGCTTCTTACTCCGACGGCCAGTGGCAGAATGCTCATGCTACTTTTTACGGCGAAAGTGACGGCTCTGGAACTATGGGAGGTGCTTGCGGTTATGGAAACTTGTTCGACGATGGCTACGGTGTGAACACGGCGGCGCTGAGCACTGCTCTGTTCAACAACGGTTTGAGCTGCGGAGCTTGTTTCGAGATTAAGTGCGTTGACGATCCACAGTGGTGCCATCCCGGGAATCCGTCAATTATCATAACGGCCACGAACTTTTGCCCTCCGAACTTCGCGATTCCGAGCGACAATGGAGGGTGGTGCAACCCTCCCCGTCCTCATTTCGACCTCTCCATGCCAATGTTCCTCAAGCTCGCCCAGTACAAAGCCGGAATTATTCCCGTCACTTATCGCAGGGTGGGTTGCGTGAAAAAAGGAGGAATAAGATTCAGTATGAACGGCTTCCAGTACTTCAACTTGGTGCTCATCTCAAACGTGGGAGGCGCAGGGGACGTGGTGGAGGTGAGCGTGAAAGGCAGCAGCAACACCAAATGGATGAGCATGAGACGGAACTGGGGCCAGAACTGGCAACCCGACACCGTCTTGGTTGGTCAGTCGCTGTCCTTCAGAGTCACAACCAGCGACCGTCGCACCGTCACCTCCTGGAACGTCGTCCCCTCTAATTGGCAGTTTGGGCAGACGTTCTCCGGTGACAATTTCAGCGTCTAA 765 54.51 MPALAFTLPALLLSLLSLGASYSDGQWQNAHATFYGESDGSGTMGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITATNFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRRVGCVKKGGIRFSMNGFQYFNLVLISNVGGAGDVVEVSVKGSSNTKWMSMRRNWGQNWQPDTVLVGQSLSFRVTTSDRRTVTSWNVVPSNWQFGQTFSGDNFSV 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6347642 6349093 + CmoCh04G012510.1 Cmo04g01251 380226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01251 254 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Cmo04g01251 254 Gene3D - 159 252 IPR036749 -
Cmo04g01251 254 Pfam Expansin C-terminal domain 160 238 IPR007117 -
Cmo04g01251 254 Pfam Lytic transglycolase 62 149 IPR009009 -
Cmo04g01251 254 PANTHER EXPANSIN-A4 17 253 - -
Cmo04g01251 254 Gene3D - 16 154 IPR036908 -
Cmo04g01251 254 SUPERFAMILY Barwin-like endoglucanases 26 177 IPR036908 -
Cmo04g01251 254 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Cmo04g01251 254 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Cmo04g01251 254 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Cmo04g01251 254 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Cmo04g01251 254 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Cmo04g01251 254 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Cmo04g01251 254 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Cmo04g01251 254 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Cmo04g01251 254 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Cmo04g01251 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 159 IPR007112 -
Cmo04g01251 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 249 IPR007117 -
Cmo04g01251 254 PANTHER EXPANSIN-A15 17 253 IPR002963 GO:0009664
Cmo04g01251 254 SMART dpbb_1 62 149 IPR007112 -
Cmo04g01251 254 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Cmo04g01251 254 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Cmo04g01251 254 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Cmo04g01251 254 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Cmo04g01251 254 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Cmo04g01251 254 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01251 Cmo04g02778 CCT
Cmo04g02778 Cmo04g01251 ECH
Cmo04g01251 Cmo04g02778 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01251 Cmo-Chr4:6347642 Cmo13g00120 Cmo-Chr13:694183 3.51E-130 dispersed
Cmo14g01137 Cmo-Chr14:8065072 Cmo04g01251 Cmo-Chr4:6347642 3.86E-98 dispersed
Cmo01g00634 Cmo-Chr1:3246744 Cmo04g01251 Cmo-Chr4:6347642 1.03E-139 wgd
Cmo02g00797 Cmo-Chr2:4921039 Cmo04g01251 Cmo-Chr4:6347642 3.75E-141 wgd
Cmo20g00433 Cmo-Chr20:2031500 Cmo04g01251 Cmo-Chr4:6347642 9.08E-139 wgd
Cmo03g00435 Cmo-Chr3:4977128 Cmo04g01251 Cmo-Chr4:6347642 7.08E-142 wgd
Cmo04g00211 Cmo-Chr4:1056541 Cmo04g01251 Cmo-Chr4:6347642 3.75E-82 wgd
Cmo04g01251 Cmo-Chr4:6347642 Cmo04g02778 Cmo-Chr4:20041108 1.46E-121 wgd
Cmo04g01251 Cmo-Chr4:6347642 Cmo07g01042 Cmo-Chr7:5279087 8.36E-143 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01251 - - csv:101218950 412.92