Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01270 ATGGGATTGTTTAGAGCTGGTTCTGCCTTGGCAAAGATTGCCATTAGGAGAACTTTGGCACATGGGGGAGGATCATATGCTGCGAGATCACGTATTGTTTCCTCTCAGAATCGATATTTTCACACTACGGTTTTTAAGTCTAAAGCACAATCTGCACCAGTGCCTCGCCCTGTGCCTCTTTCGAAGCTAACTGATAGCTTCCTGGATGGGACGAGCAGTGTGTATTTGGAGGAGCTTCAAAGGGCTTGGGAGGCTGATCCCAACAGTGTTGATGAGTCCTGGGATAATTTCTTTAGGAATTTCGTGGGTCAGGCTGCAACGTCTCCTGGTATTTCAGGCCAAACAATTCAAGAGAGCATGCGTTTGTTGTTGCTTGTCAGGGCTTACCAGGTTAATGGTCATATGAAAGCCAAGTTGGATCCATTGAATTTGGAAGAAAGAGAAATCCCAGATGATCTGGACCCTGCCTTCTATGGATTTACCGGTGCTGATCTTGATAGGGAGTTCTTCCTTGGCGTGTGGAGGATGGCTGGATTTTTATCAGAAAATCGTCCAGTGCAGACTCTCAGGTCAATATTGACCCGCCTTGAGCAAGCATACTGTGGGAGTGTGGGATATGAATATATGCACATCGCAGATCGTAATAAATGTAACTGGTTGAGAGACAAGATTGAGACCCCAACACCAATGCAGTACAATCGACAGCGCCGAGAGGTGATTCTTGATCGTCTTATATGGAGCACACAGTTTGAAAACTTCTTAGCCACTAAGTGGACTACAGCAAAAAGATTTGGGCTTGAAGGTGGCGAGACTTTGATTCCAGGGATGAAGGAGATGTTTGATAGGGCTGCAGATCTTGGAGTTGAGAGCATTGTTATTGGAATGCCTCACCGAGGAAGACTAAATGTTTTGGGTAATGTTGTTCGGAAGCCTCTGAGGCAGATCTTTAGCGAGTTTAGTGGTGGTACAAAGCCTGTGGATGAAGTTGGACTTTACACAGGAACTGGTGATGTCAAATATCACCTGGGTACTTCCTATGATCGACCAACTAGAGGTGGAAAACATATTCATCTTTCTTTGGTTGCAAATCCGAGTCACTTGGAAGCTGTTGATCCAGTTGTCGTTGGGAAAACTAGAGCAAAGCAATATTACTCCAATGACACTGAAAGGATCAAGAATATGGGCATTTTGATTCATGGTGATGGTAGCTTTGCTGGACAAGGTGTAGTGTATGAAACTCTACATCTTAGTGCTCTTCCCAACTACACCACTGGAGGAACGATCCACATTGTTGTGAATAATCAAGTTGCTTTTACTACCGATCCTAGGGCAGGAAGATCATCACAATATTGCACTGATGTTGCCAAAGCTTTGGATGCCCCCATTTTTCATGTAAATGGTGATGACATGGAAGCTGTTGTCCATGTTTGTGAGCTTGCTGCAGAGTGGCGCCAAACCTTTCATTCAGATGTTGTTGTTGATTTGGTTTGCTATCGTCGGTTTGGACACAATGAGATTGATGAGCCATCCTTCACACAACCTAAAATGTATCAGGTTATAAGGAATCATCCTTCATCTCTTGATATCTACCAGAAAAAACTTTTAGAATCTGGGCAGGTGAGCCAGGAGGATATCAATCAAATACGTGATAAGGTTAATAAAATCCTTAATGAAGAATTTTTGGCGAGCAAAGATTACGTCCCGAAAAGAAGAGACTGGCTTTCAGCATATTGGTCTGGTTTCAAGTCACCCGAACAGCTCTCAAGAGTTCGGAACACTGGAGTTAAACCAGAGATACTAAAGAATGTTGGAAAAGCTATTACTGTATTTCCAGATAATTTCAAGCCTCACAGAGCAGTCAAAAAAGTTTACGAACAAAGAGCACAGATGATTGAAACAGGAGAAGGCATTGACTGGGCACTTGGTGAAGCCCTTGCTTTTGCCACTTTGCTTGTGGAAGGCAATCACGTCAGATTGAGTGGCCAAGATGTTGAGAGAGGCACCTTTAGTCATCGGCATTCTGTTGTGCATGATCAAGAAACAGGGGCTATCTACTGTCCTTTGGACCATGTTATCATGAATCAGAATGAGGAGATGTTCACCGTAAGCAACAGCTCTCTTTCAGAGTTTGGAGTTCTTGGATTTGAGTTGGGTTACTCGATGGAAAATCCTAATTCATTGGTAATCTGGGAAGCTCAATTTGGTGATTTTTCAAATGGCGCTCAAGTTATCTTTGATCAATTCTTGAGCAGTGGTGAAGCGAAGTGGCTGCGGCAGACAGGGCTTGTTTTGCTGCTTCCCCATGGCTATGATGGTCAGGGCCCTGAACATTCGAGTGCAAGGATGGAGCGTTTCCTTCAGATGAGTGACGACAACCCTTTTGTTATTCCGGAGATGGATTCTACCCTTAGAAAGCAAATTCAGGAATGCAACTTGCAAGTTGTGAATGTTACCACTCCCGCCAACTATTTCCATGTTCTGCGGAGACAGATACACAGGGAGTTCCGTAAGCCCCTAGTTGTGATGGCTCCTAAGAATCTGCTTAGACACAAGGAGTGTAAATCTAATTTGTCCGAGTTTGATGATGTCCAAGGTCATCCAGGCTTTGACAAGCAGGGAACCAGATTTAAGCGCCTTATAAAGGACCAGAACAATCACTCTGATCATGAAGAGGGTATTAGACGGCTAATTCTTTGCTCTGGAAAGATTTACTATGAGCTTGATGATGAGCGAACCAAGACAGACGGAAAGGACGTTGCAATATGTAGGGTGGAACAACTTTGCCCCTTTCCTTATGACCTCATCCAGCGAGAGCTGAAGCGATATCCAAATGCCGAGGTCGTTTGGTGCCAGGAGGAACCAATGAATATGGGTGCATTCACCTACATTTCTCCTCGTCTTGCCACAGCCATGAGGGCTCTTGGAAGAGGCACGTCAGAAGATATTAAGTACGTCGGTCGGGCTCCATCAGCTTCTACTGCTACTGGATTCTATTCAGTTCATGTCAAGGAACAAACCGAGCTTGTGAAGAAAGCATTGCAGCCTGAGCTTGGCTATGCTGGAATGACCATTCTTGCTAAGACAGCTTTGGACAAAGGGATGAGCCAATATGTTTTTGTGGCTTATCGTCAAATTGTTGCTACCATTGTCTTTGTTCCTTTTGCTATCATCTTTGACAGGAAAGTGAGGACAAAAATGACGTTTTCGTTGTTCTTCAAGATTGTGATGCTCGGTTTATTAGAGCCGGTAGTGGATCAGAACTTGTTCTATGCTGGTATGAAGCTCACAACAGCAACCTTTGCAGCTGCGTTGTGCAATGTTCTTCCAGCTTTTGCGTTCCTCATGGCTTGGGCTTGCAGGCTTGAGAAAGTGAACATTTTGAAAAGGGGAAGCCAAGCAAAAATCATAGGAACCATAGTGACAGTAGGAGGAGCCATGATTATGACCTTCATAACAGGACCCATGTTGAATCTGCCATGGACAAAGCCCTACCACCCCTCTGCTTCTTCTTCTTCTTCTTCTTCAGCTGCTTCTACAAATCACCAAAGCCCAATCAAGGGCTCCCTCATGATTGCCATTGGCTGCATTAGCTGGTCAGCCTTCATCATTCTTCAAGCAATTACATTGAAATGGTACCCAGCCGAGCTGTCGCTTACAGCATTGATATGCTTGGTGGGCAGCATTGGAGACACAGGGGTGGCTTTGGTGATGGAGAGGGGGAGCCCTTCAGCTTGGGCTTTGCACTTAGACACACAGCTTCTGGCTGTGGTTTATGGTGGAGTAATGTGCTCAGGAATAGCTTATTACATTCAAGGAGTGGTGATGCAAACAAAAGGGCCTGTTTTTGTGAGTGCATTCAACCCTCTGAGCTTGATTCTTGTAGCAATCATGAGCTCCTTCATCTTGTGTGAGATCATGATTATTGGAGCAGTGGCCATAATGATTGGGTTGTACATGGTTTTGTGGGGCAAAGCCAAAGATCAGGCTTCAGCTAAGATGACATGTTGTGAGCAGCAACAAATGGGTGGATCAAGTCAAGAGTTCGTGGGGATTGATGTTGGCAAAGAGGGAAGTAATTGA 4080 44.71 MGLFRAGSALAKIAIRRTLAHGGGSYAARSRIVSSQNRYFHTTVFKSKAQSAPVPRPVPLSKLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQAATSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLNLEEREIPDDLDPAFYGFTGADLDREFFLGVWRMAGFLSENRPVQTLRSILTRLEQAYCGSVGYEYMHIADRNKCNWLRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKHIHLSLVANPSHLEAVDPVVVGKTRAKQYYSNDTERIKNMGILIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTDVAKALDAPIFHVNGDDMEAVVHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQVIRNHPSSLDIYQKKLLESGQVSQEDINQIRDKVNKILNEEFLASKDYVPKRRDWLSAYWSGFKSPEQLSRVRNTGVKPEILKNVGKAITVFPDNFKPHRAVKKVYEQRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVVHDQETGAIYCPLDHVIMNQNEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVIWEAQFGDFSNGAQVIFDQFLSSGEAKWLRQTGLVLLLPHGYDGQGPEHSSARMERFLQMSDDNPFVIPEMDSTLRKQIQECNLQVVNVTTPANYFHVLRRQIHREFRKPLVVMAPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNNHSDHEEGIRRLILCSGKIYYELDDERTKTDGKDVAICRVEQLCPFPYDLIQRELKRYPNAEVVWCQEEPMNMGAFTYISPRLATAMRALGRGTSEDIKYVGRAPSASTATGFYSVHVKEQTELVKKALQPELGYAGMTILAKTALDKGMSQYVFVAYRQIVATIVFVPFAIIFDRKVRTKMTFSLFFKIVMLGLLEPVVDQNLFYAGMKLTTATFAAALCNVLPAFAFLMAWACRLEKVNILKRGSQAKIIGTIVTVGGAMIMTFITGPMLNLPWTKPYHPSASSSSSSSAASTNHQSPIKGSLMIAIGCISWSAFIILQAITLKWYPAELSLTALICLVGSIGDTGVALVMERGSPSAWALHLDTQLLAVVYGGVMCSGIAYYIQGVVMQTKGPVFVSAFNPLSLILVAIMSSFILCEIMIIGAVAIMIGLYMVLWGKAKDQASAKMTCCEQQQMGGSSQEFVGIDVGKEGSN 1359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6434871 6445805 + CmoCh04G012700.1 Cmo04g01270 380245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01270 1359 SUPERFAMILY Multidrug resistance efflux transporter EmrE 1042 1149 - -
Cmo04g01270 1359 TIGRFAM 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 114 1012 IPR011603 GO:0004591|GO:0006099|GO:0030976
Cmo04g01270 1359 CDD TPP_E1_OGDC_like 250 517 - -
Cmo04g01270 1359 Pfam Dehydrogenase E1 component 245 566 IPR001017 GO:0016624
Cmo04g01270 1359 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 152 582 IPR029061 -
Cmo04g01270 1359 Pfam 2-oxoglutarate dehydrogenase C-terminal 872 1013 IPR031717 -
Cmo04g01270 1359 Pfam 2-oxoglutarate dehydrogenase N-terminus 65 103 IPR032106 -
Cmo04g01270 1359 Gene3D - 203 573 - -
Cmo04g01270 1359 Gene3D - 593 865 - -
Cmo04g01270 1359 PANTHER 2-OXOGLUTARATE DEHYDROGENASE, MITOCHONDRIAL-LIKE 1 1015 - -
Cmo04g01270 1359 Pfam EamA-like transporter family 1019 1149 IPR000620 GO:0016020|GO:0016021
Cmo04g01270 1359 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 620 856 IPR029061 -
Cmo04g01270 1359 SUPERFAMILY Multidrug resistance efflux transporter EmrE 1247 1325 - -
Cmo04g01270 1359 Pfam Transketolase, pyrimidine binding domain 636 851 IPR005475 -
Cmo04g01270 1359 SMART Transket_pyr_3 637 850 IPR005475 -
Cmo04g01270 1359 Gene3D TPP helical domain 115 202 - -
Cmo04g01270 1359 PANTHER 2-OXOGLUTARATE DEHYDROGENASE 1 1015 IPR011603 GO:0004591|GO:0006099|GO:0030976
Cmo04g01270 1359 Gene3D - 868 1016 IPR042179 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01270 Cmo04g02749 CCT
Cmo04g01270 Cmo15g00423 CCT
Cmo04g00226 Cmo04g01270 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01270 Cmo-Chr4:6434871 Cmo04g01883 Cmo-Chr4:9586137 6.47E-174 dispersed
Cmo04g02749 Cmo-Chr4:19903662 Cmo04g01270 Cmo-Chr4:6434871 3.45E-31 dispersed
Cmo15g00424 Cmo-Chr15:1916632 Cmo04g01270 Cmo-Chr4:6434871 1.98E-112 dispersed
Cmo04g01270 Cmo-Chr4:6434871 Cmo04g01271 Cmo-Chr4:6450155 5.11E-174 tandem
Cmo15g00423 Cmo-Chr15:1906659 Cmo04g01270 Cmo-Chr4:6434871 0 wgd
Cmo03g00455 Cmo-Chr3:5080508 Cmo04g01270 Cmo-Chr4:6434871 5.35E-122 wgd
Cmo04g00226 Cmo-Chr4:1127045 Cmo04g01270 Cmo-Chr4:6434871 0 wgd
Cmo04g01270 Cmo-Chr4:6434871 Cmo04g02746 Cmo-Chr4:19879893 9.91E-115 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01270 K00164 - csv:101222022 2029.99