Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01271 ATGGAGGGTGTTATGAGGCTTTTGGTGTCTGCAAAGCCATATTTAGGGGTCGTTTTTGTGCAGTTCGGGTCGGCTGGAATGGCGATCATTGCGAAGTCAGCTCTCAACAAAGGGATGAGCCAATATGTGTTTGTGTTCTATCGAATGGCTGTTGCTACTCTCGTCTTTGCTCCTTTTGCCATTGTCTTTGACAGGAAAGTGAGAACTAAGATGACCCTTCCGTTGTTCTTCAAGATTGTGATGCTCGGTTTATTAGAGCCGGTGATTGATCTGAACTTGTACTTTACTGGTATGAAGTTCACAACAGCAACCTTTGCAGTCGCCATGTGCAATGTTCTACCAGCTTTTGCTTTCCTCATGGCTTGGGCTTGCAGGCTTGAGAAAGTGAATATTTTGAAAAGGGGAAGCCAAGCAAAAATCATAGGAACCATGGTGACAGTAGGAGGAGCCATGATTATGACCTTCATAACAGGACCCATGTTGAATCTGCCATGGACAAAGCCCTACCACCCCTCTGCTTCTTCATCTTCTTCTTCAGCTGGTTCTGCAAATCACCAAAGCGCAATCAAGGGCTCCCTTATGATTGCCATTGGCGACATTTCCTGGTCAGCTTTCATCATTCTTCAGATGATTACATTGAAATCGTACCCGGCCGAGCTGTCTCTTACAGCGTTGATTTGCTTGGTGGGTACCATTGGTGGCTGTGGGGTGGCTTTGGTCATGGAGAGGGGGAACCCTTCTGCTTGGGCAGTGCACTTTGATAGACAGCTTCTGGCAGTGGTTTACGCTGGAGTAATGTGTTCAGGGGTAACTTATTATATTCAAGGAGTGGTGATGAAAATAAAAGGGCCTGTTTTTGTCACTGCATTCAATCCTCTGAGCTTGATTCTTGTTGCAATCTTGAGCTCCTTCATCTTGTCTGAGATCATGTTCCTGGGAAGGATTGTTGGAGCAGTGGTGATAATCACAGGGTTGTACCTGGTTTTGTGGGGCAAAAGCAAGGATCAGCTTTTAGTTAAACCAGAATCTGATAAGATATCATCTGGTAAGCAACAAATGATTGCAACAACGGGTGAGGAGGGCTCGGAGTCCTTTCAATCGAGTCAAGAATTCACGGCGCTTGATGTTGGCAAGGAGGACACAAAATGA 1149 45.78 MEGVMRLLVSAKPYLGVVFVQFGSAGMAIIAKSALNKGMSQYVFVFYRMAVATLVFAPFAIVFDRKVRTKMTLPLFFKIVMLGLLEPVIDLNLYFTGMKFTTATFAVAMCNVLPAFAFLMAWACRLEKVNILKRGSQAKIIGTMVTVGGAMIMTFITGPMLNLPWTKPYHPSASSSSSSAGSANHQSAIKGSLMIAIGDISWSAFIILQMITLKSYPAELSLTALICLVGTIGGCGVALVMERGNPSAWAVHFDRQLLAVVYAGVMCSGVTYYIQGVVMKIKGPVFVTAFNPLSLILVAILSSFILSEIMFLGRIVGAVVIITGLYLVLWGKSKDQLLVKPESDKISSGKQQMIATTGEEGSESFQSSQEFTALDVGKEDTK 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6450155 6453200 + CmoCh04G012710.1 Cmo04g01271 380246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01271 382 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 154 - -
Cmo04g01271 382 Pfam EamA-like transporter family 14 153 IPR000620 GO:0016020|GO:0016021
Cmo04g01271 382 Pfam EamA-like transporter family 190 329 IPR000620 GO:0016020|GO:0016021
Cmo04g01271 382 PANTHER WAT1-RELATED PROTEIN 9 342 - -
Cmo04g01271 382 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 334 - -
Cmo04g01271 382 MobiDBLite consensus disorder prediction 345 382 - -
Cmo04g01271 382 MobiDBLite consensus disorder prediction 345 374 - -
Cmo04g01271 382 PANTHER WAT1-RELATED PROTEIN 9 342 IPR030184 GO:0016021|GO:0022857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01271 Cmo15g00424 CCT
Cmo04g01271 Cmo04g02748 CCT
Cmo04g01271 Cmo04g00228 ECH
Cmo04g01271 Cmo04g02748 ECH
Cmo04g02748 Cmo04g01271 ECH
Cmo04g01271 Cmo15g00424 ECH
Cmo04g00228 Cmo04g01271 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00227 Cmo-Chr4:1137645 Cmo04g01271 Cmo-Chr4:6450155 0 dispersed
Cmo04g01271 Cmo-Chr4:6450155 Cmo04g01883 Cmo-Chr4:9586137 0 dispersed
Cmo04g01270 Cmo-Chr4:6434871 Cmo04g01271 Cmo-Chr4:6450155 5.11E-174 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01271 - - csv:101206072 569.696