Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01272 ATGTCTTTCCAGCATAAAAGCTTTTGGATACCAAGAGATGCTGGATGTTTAACTGATGGAGAGATGAACTATGATAGCTCCTCCAGAATCGAAGCCAAACGTGGCCATCAATGGTTCATGGATGGCAGTGCACCAGAGCTATTCAGTAGCAAGAAGCAAGCAATAGAAACTGTAAATACTAGACCTGTTCCAGGAGTTCCACACATGAATGTTTCTCCCTGGGAAAACACTTCAAGTTTTCAGTCAGTTCCTGGGCACTTCACTGATCGTCTTTTCGGCTCTGAGCCAGTACGAACTGTCAACTTGGTCGATAGAGGCATCACTGTTGGAAATGCAAATATGGACATGGGAAGAAAGGAGTATGAGAATCATTTTGCAAACAACCCATCCGTTGGCTTGTCCACGTCCCAATCCATTGAGGATTCCTCATCATGCCTAAATTTTGGTGGAATTAGAAAAGTTAAAGTCAATCAAGTCAGGGATCCTGACATTGGCATGTCTGCCTCTTTGGGACATGCCTATAGTAGGGGTGATAATGGTACAATTTCAATGGGTACAACATTTAACAAAAACCACGAGCACGCCATTTCATTGGGCCATACATATAACAGTCGAGATGAGAATGCCATCTCGGTTGGCCCTGCATATCACAAGACAGACGACAGTTTCATTTCCATGGGTCATGCTTTCAGCAAGGGTGATGAGAATTTTATTACAATTGGTCCTAACTATAGCAAGGGAGACAATAACATCCTATCGATGAGCCAGCCTTTTGACAAAGGGGATGACTCTTTTATTTCAATGGGTCAATCTTATGAGAAGGCAGAAGGTAATATCATTTCTTTTGGTGCTTCCTACAATAAAGGGCATGAAAATTTTATCTCAATGGGGCCAACCTATAGTAAGGCAGGTGATACTTTCATTTCAATGGCGCCCTCCTATAATAAGGGAAATGATGATAACTTGTCCATGGGTCCAACCTTTGACAAGGTAAACTCGGACGTTGTACATGTCGGTCCTAAATTTGACAAAGCTGATTCTGGTTCGGTGTCAATGACTCACAACTATCATAAAGGTGAGACTAATACCATATCTTTTGGAGGCTTTGACGATGAGAATGGGACAGGTAATCCTTCTGGTGGGATCATTAGCAGTTATGACTTGTTAATGGCTAATCAGGCTTCTGCCCAAGCATCAGAAGTATCAACCATGAGAGATTCAGTTCATCCCAATGTGGAAGTGAACATTAACGTAAAAGTTGATGCTAAAATCGACACAAGTTCCAAGATTAGAGAGCCGAGGACGACTAAGAAGGTGTCACCCAATAGCTTCCCTTCAAATGTTAAAAGCTTACTCTCAACTGGTATGCTTGATGGGGTTCCTGTGAAATATGTTTCCTGGTCACGGGAGAAAAATCTGAAAGGAACAATAAAAGGAACTGGATACTTATGCAGCTGTGACAACTGCAATCATTCAAAGGCTCTCAATGCTTATGAGTTTGAGAGGCACGCTGGCTGCAAAACCAAACATCCAAATAACCACATTTACTTTGAGAATGGTAAAACTATCTATGCTGTTGTTCAAGAGCTAAAGAACACCCCTCAGGAGATGTTATTTGATGCAATTCACAATGTGACTGGCTCTCCCATTAATCAGAAGAACTTTCGTATTTGGAAAGCATCTTATCAAGCTGCCACTCTTGAACTCCAGCGTATTTATGGAAAAGATGAACCAGTAGTTGCAAGCAAAGATGATATGGATGAGTGGCGATTGGTGAAGGCACGATTCGGTCGAGTCAGCTACCTGCCGACTTATGAAGACATCATTTTGATCACAAGTGTGCAATGCAATGCTGAGAATGCCTTCTGCTTTTGCTTTCATGTTGCATTTTGTTCCTTATATTATCCCTTGGCAGATTTGTGTATTGATGCATTTTAG 1938 41.74 MSFQHKSFWIPRDAGCLTDGEMNYDSSSRIEAKRGHQWFMDGSAPELFSSKKQAIETVNTRPVPGVPHMNVSPWENTSSFQSVPGHFTDRLFGSEPVRTVNLVDRGITVGNANMDMGRKEYENHFANNPSVGLSTSQSIEDSSSCLNFGGIRKVKVNQVRDPDIGMSASLGHAYSRGDNGTISMGTTFNKNHEHAISLGHTYNSRDENAISVGPAYHKTDDSFISMGHAFSKGDENFITIGPNYSKGDNNILSMSQPFDKGDDSFISMGQSYEKAEGNIISFGASYNKGHENFISMGPTYSKAGDTFISMAPSYNKGNDDNLSMGPTFDKVNSDVVHVGPKFDKADSGSVSMTHNYHKGETNTISFGGFDDENGTGNPSGGIISSYDLLMANQASAQASEVSTMRDSVHPNVEVNINVKVDAKIDTSSKIREPRTTKKVSPNSFPSNVKSLLSTGMLDGVPVKYVSWSREKNLKGTIKGTGYLCSCDNCNHSKALNAYEFERHAGCKTKHPNNHIYFENGKTIYAVVQELKNTPQEMLFDAIHNVTGSPINQKNFRIWKASYQAATLELQRIYGKDEPVVASKDDMDEWRLVKARFGRVSYLPTYEDIILITSVQCNAENAFCFCFHVAFCSLYYPLADLCIDAF 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6453158 6457345 - CmoCh04G012720.1 Cmo04g01272 380247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01272 645 Pfam Tify domain binding domain 475 530 IPR032308 -
Cmo04g01272 645 PANTHER AUTOIMMUNE REGULATOR 1 581 - -
Cmo04g01272 645 PANTHER N-LYSINE METHYLTRANSFERASE 1 581 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01272 Cmo04g00229 ECH
Cmo04g00229 Cmo04g01272 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01272 Cmo-Chr4:6453158 Cmo02g01406 Cmo-Chr2:8343868 1.10E-17 dispersed
Cmo14g00154 Cmo-Chr14:674389 Cmo04g01272 Cmo-Chr4:6453158 8.35E-42 wgd
Cmo02g00831 Cmo-Chr2:5051530 Cmo04g01272 Cmo-Chr4:6453158 1.69E-62 wgd
Cmo20g00463 Cmo-Chr20:2147031 Cmo04g01272 Cmo-Chr4:6453158 1.68E-41 wgd
Cmo04g00229 Cmo-Chr4:1146103 Cmo04g01272 Cmo-Chr4:6453158 0 wgd
Cmo04g01272 Cmo-Chr4:6453158 Cmo06g00314 Cmo-Chr6:1533434 3.93E-41 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01272 - - csv:101206313 1082.4